BAC Information

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BAC

Clone NameMSMg01-329G03
Chromosome17 (Build37)
Map Location 30,333,662 - 30,504,019
singlet/doubletdoublet
Overlap geneZfand3, Btbd9
Upstream geneCpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1, LOC100042885, LOC100042888
Downstream geneEG623169, Glo1, LOC666942, 1700097N02Rik, Dnahc8, Glp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329G03.T7 (MSMg01no329_g03.b1)MSMg01-329G03.TJ (MSMg01no329_g03.g1)
ACCAG446232AG446233
length862770
length of high quality
(start - end)		222 (46 - 267)325 (75 - 399)
definitionCHROMAT_FILE: MSMg01no329_g03.b1 PHD_FILE: MSMg01no329_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:49 2005CHROMAT_FILE: MSMg01no329_g03.g1 PHD_FILE: MSMg01no329_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,333,662 - 30,333,879)(30,503,695 - 30,504,019)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGACATTCACGGCTACATAGGGAGACCCTGTCCCAAAAAAGCA
AATGATGTCCTTGAGGTTTGGCATCTAGTTATGACTCTTGCCTGAACCAG
TCTCATGTGACAGTTCAGAATGATTTGATTCCACAGTTTCTGTTTGGCAC
TGGCATTCTTTGAGTAGAGACACCTTTTTTTTTTTTAAACCTGTAGTTGC
CATGGATCCCTCCCTCCCTCACTCACTATTTATTTTCTTATCTTTTTATT
TCTTTATCTACTCTATCATATTTTTTTTTTTCTTAATATTTATATACCAC
CTATCATTTCCCTTTTTTCCCTTTCTATCCTCCCCCTTCCCCCTTTCCAT
TCTCACCTTTCCTTTTTCTTTTCTTTCCCCCCCCCTCTTTCGTTTCATAT
CCTCTCCCCACTTCTAAATCTACTTCCTTCACCACTCACCTTTTCCTCTT
TTTCTACTCTCCTCTATTTCTTTTTCTTCCACTTTCTTCATTCCTCCCTC
TCTCTTCTCTTTGTCTTTTACTTTATATTTTCTTTTTTATTCTACCTTTC
TCTATTCTTCATTTTTTCTTCCCACATAATTACCATTTTTCCCACCACGC
CGGACTTATATCTTACTTTATCTATCATATCTTTTCCTTTTCATATTTTT
ATTTTTTTACTATTTTAGCTCCCTACCATCACTATTTNATAAACAACACC
CAATATCCTCCCTTCTTCCTTCCTCTCTTTCATATCCCATTGTTTCTCAC
CTTTTACTCTCTCATATTAATACCTCATTAATCCATTTTTCCTACCAATT
TATACTAACCTG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTTGTGTTTGCAGTTGTGCTCATG
AGTGAGTTCACCTAGAATGTTCCTGGACACCCTAGTCTGAGTTTCAGTTT
GTATGATTTAATAGAATGTGTTTTTCCTTCCAAATGGAGGAATTTATATA
GTGTTTTAAAATTGACTATTTGCTATTCCATGCCTGTAAAATTTTCTGAG
CTATGTTAGAAAATTATTAGCTAATGGTTAAATAGCTAATGTTTGGGGGA
TGGAAAAGATGGCTCAGTTGTTGAAGAACGTGTGCTGCTCTTGTATGTGA
CCCAGGTTTCAGTCCTGAGCACTCGTATGACAGCTCACTGCCATCAGTTA
CAGTTCCAGGTATTTGACCCCCCCCCTGGCCTCTCCAAGTACCTGTATAC
ATGTAGTGTACCCATATGGACTCCGTCCCACTCTTATACCTATTATAAAT
TTTACAATAATTTTCTTTTGCTTAATACTTCCCCTGGCCTTATTTCACTT
CTTTTTTGTTCTTTTTTTATTTTCTTCTATTATTTCCTTTTTTGTTAATT
CAACCTTATTAATCTTCGGTCCGTTTATTTTTCATTTATTCGCTTTACTA
ATGTTTTTTTTTATAGTTCTGATACTATCCTCTCTTAATCCTCACCCACA
CTTTCTTTCTTTTCTTTCTTCTCAATTTATCAATCTTCCTTTTTTCCTTA
TTTTTTCTCCTTTTTGTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_g03.b1 MSMg01no329_g03.b1 CHROMAT_FILE:
MSMg01no329_g03.b1 PHD_FILE: MSMg01no329_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:49 2005
         (222 letters)



>mm_chr17_30333458_30334079
          Length = 622

 Score =  398 bits (206), Expect = e-115
 Identities = 215/218 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggacattcacggctacatagggagaccctgtcccaaaaaagcaaatgatgtc 64
           |||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggacagccaaggctacatagggagaccctgtcccaaaaaagcaaatgatgtc 264

                                                                       
Query: 65  cttgaggtttggcatctagttatgactcttgcctgaaccagtctcatgtgacagttcaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttgaggtttggcatctagttatgactcttgcctgaaccagtctcatgtgacagttcaga 324

                                                                       
Query: 125 atgatttgattccacagtttctgtttggcactggcattctttgagtagagacaccttttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgatttgattccacagtttctgtttggcactggcattctttgagtagagacaccttttt 384

                                                 
Query: 185 tttttttaaacctgtagttgccatggatccctccctcc 222
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttttttaaacctgtagttgccatggatccctccctcc 422


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 622
Length adjustment: 9
Effective length of query: 213
Effective length of database: 613
Effective search space:   130569
Effective search space used:   130569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no329_g03.g1 MSMg01no329_g03.g1 CHROMAT_FILE:
MSMg01no329_g03.g1 PHD_FILE: MSMg01no329_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:49 2005
         (325 letters)



>mm_chr17_30503599_30504323
          Length = 725

 Score =  598 bits (309), Expect = e-175
 Identities = 321/325 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attttgtgtttgcagttgtgctcatgagtgagttcacctagaatgttcctggacacccta 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 attttgtgtttgcagttgtactcatgagtgagttcacctagaatgttcctggacacccta 362

                                                                       
Query: 61  gtctgagtttcagtttgtatgatttaatagaatgtgtttttccttccaaatggaggaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtctgagtttcagtttgtatgatttaatagaatgtgtttttccttccaaatggaggaatt 302

                                                                       
Query: 121 tatatagtgttttaaaattgactatttgctattccatgcctgtaaaattttctgagctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tatatagtgttttaaaattgactatttgctattccatgcctgtaaaattttctgagctat 242

                                                                       
Query: 181 gttagaaaattattagctaatggttaaatagctaatgtttgggggatggaaaagatggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gttagaaaattattagctaatggttaaatagctaatgtttgggggatggaaaagatggct 182

                                                                       
Query: 241 cagttgttgaagaacgtgtgctgctcttgtatgtgacccaggtttcagtcctgagcactc 300
           |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 181 cagttgttgaagaacgcgtgctgctcttgtatgtaacccaggtttcagtcctgagcactc 122

                                    
Query: 301 gtatgacagctcactgccatcagtt 325
           |||||||||||||||||||| ||||
Sbjct: 121 gtatgacagctcactgccattagtt 97


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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