BAC Information

Click to search

BAC

Clone NameMSMg01-330A17
Chromosome17 (Build37)
Map Location 88,235,028 - 88,235,341
singlet/doubletsinglet
Overlap genenone
Upstream gene1700090G07Rik, Atp6v1e2, Rhoq, Pigf, Cript, EG433144, Socs5, Mcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12
Downstream geneLOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058, Foxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330A17.T7 (MSMg01no330_a17.b1)MSMg01-330A17.TJ (MSMg01no330_a17.g1)
ACCAG446705AG446706
length752820
length of high quality
(start - end)
320 (44 - 363)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no330_a17.b1 PHD_FILE: MSMg01no330_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:41 2005CHROMAT_FILE: MSMg01no330_a17.g1 PHD_FILE: MSMg01no330_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAATGTGCTTTACATCAAGCCTGCAAGCTCACTTGGTTGTCTCTCTA
TCTTGGTAATGGGAGACCCCAACACGCTGGACTTCTACAGAGTAAAACAC
TCTTTGTGTTTGCATACTATTTGAGTCTGGGGTATCATTCTTTGGCCAAT
CATGGACCCCTGCATAGTGAAGGTTGTGTCAGGTCATGATGTATGCAGTT
GCTAGGTCTCTGAGGGCAGGCCAGTGGAATTACCTGTGTACTAACACTAA
CTCTGTTTTGAATTCTTTCCATGTTCCTCCAATCCCGGCTGTCCACACCT
CTTGAATATATTCANGTTAATTACCCCCCCCACCCCCCTCCGGCTGACTG
TATAGTCTTCCATGACACCCCCAAGATGATAAAAAAAACATCTTACAGCA
GCCTAAGGGTTATAAACCGAGGGGCCAGGCAAGAAGCGGGGGCGGGGGGA
CTCAGCTGGGTCATACGCCGTAAGCAACACACTATGCCAAACTCCTGTAA
GGAGCAGGACTCAGGGAAATGCTGTGCTGTGCTGTGCCTTGTTATAAGAA
GCCTGTTTGTCCCTGTTGGACTTGGTATGTGTATGTGAATGAAATGTAAT
GACCAGTCGGGAAAGATCTGTTACACAGGGTGCGCCCCCGCCGTAACTTT
TTATTTGCAATTTTATCAATTCTCTCTCATCCTTTTTCATTTTATATTAT
TN
ACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCTTTTCCTCAGTGGTAAAAA
GGACCTGTAAAAGCTGCTGACAATCATCCCAAGTGGGCTGATGAGAGAAC
ATGAGAGATTCCATTAAATTAGTCAGGCTAGAGGGGTTTTCAGAGAAAGG
GGAGTGGTTTGCATTCCAATTATAGAGATCAGAGGAGGAAAAGGGCCAAT
ATTGAAGGGGCTACAGTTGTCCGGGGTCCGCTGGTGGGGGGCTGTAAGCA
CATAGAGGTAATGCAGTAGTTGAATCTGGTCCCTCTGGACTCTGGGCTTG
TCGGCTTCGGGTTTCGGTGCNGTCTAATAACGTGACCCTTCAATGGCACC
CTGTTGAGGGATCTGACCCCCCCGTTATTGAAAAATATAAATAATGTGCG
GGGGGGGTGTTTATTTACTAATAACATTTTTTTTTTACTAATATTTTATA
CTTTTCCTCTGTCCTTTTATGTCTTCTAACTGCACTTCTATTCTTAATAT
TATACTTTTTTCACCTATTTCTAATAATTTTTATTTATATCCTTATTACT
CTTTATTTACTTATTTTATCAATTTTATATATTCATTTTTCATTCTTATA
TATCTAAAATACTCTGATTTTTTGTTTTCCTACTTACTATGCTACGGCAT
TTTATCTTTTTTTTTTCTTTTATATTTTTTACGTCTTATCTATCATAATC
TATGTTCCTTACTCATCATTTATTATATTCTTTTTATATTTTATTTCTTT
ATACAGTTCTTCTACCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_a17.b1 MSMg01no330_a17.b1 CHROMAT_FILE:
MSMg01no330_a17.b1 PHD_FILE: MSMg01no330_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:41 2005
         (320 letters)



>mm_chr17_88234657_88235376
          Length = 720

 Score =  545 bits (282), Expect = e-159
 Identities = 306/314 (97%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattccaatgtgctttacatcaagcctgcaagctcacttggttgtctctctatcttggta 65
           ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 685 aattccaatgtgctttaaatcaagcctgcaagctcacttggtcgtctctctatcttggta 626

                                                                       
Query: 66  atgggagaccccaacacgctggacttctacagagtaaaacactctttgtgtttgcatact 125
           |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgggagaccacaacatgctggacttctacagagtaaaacactctttgtgtttgcatact 566

                                                                       
Query: 126 atttgagtctggggtatcattctttggccaatcatggacccctgcatagtgaaggttgtg 185
           ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 565 atttgagtctggggtatcattttttggccaatcatggacccttgcatagtgaaggttgtg 506

                                                                       
Query: 186 tcaggtcatgatgtatgcagttgctaggtctctgagggcaggccagtggaattacctgtg 245
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcaggtcatgacgtatgcagttgctaggtctctgagggcaggccagtggaattacctgtg 446

                                                                       
Query: 246 tactaacactaactctgttttgaattctttccatgttcctccaatcccggctgtccacac 305
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tactaacactaactctgttctgaattctttccatgttcctccaatcccggctgtccacac 386

                         
Query: 306 ctcttgaatatatt 319
           ||||||||||||||
Sbjct: 385 ctcttgaatatatt 372


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)