BAC Information

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BAC

Clone NameMSMg01-330B04
Chromosome17 (Build37)
Map Location 22,065,497 - 22,066,196
singlet/doubletsinglet
Overlap gene3110048L19Rik
Upstream geneLOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960
Downstream gene4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330B04.T7 (MSMg01no330_b04.b1)MSMg01-330B04.TJ (MSMg01no330_b04.g1)
ACCAG446727AG446728
length736732
length of high quality
(start - end)		689 (45 - 733)627 (84 - 710)
definitionCHROMAT_FILE: MSMg01no330_b04.b1 PHD_FILE: MSMg01no330_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:43 2005CHROMAT_FILE: MSMg01no330_b04.g1 PHD_FILE: MSMg01no330_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:44 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGATGAATTATAAGATCATATTTGTGAGTGAAGCATTTGTCACA
TTCACTACATTGATAAGGGTTTTCCCCTGTATGAATTCTCTGATGAACAT
TAAGATTATATTTTTGGGTAAAGCATTTCTCACATTCACTACATTTGTAA
GGTTTTTCTCCTGTATAAACTCTGATGAATAGTTTTGGGTAAAGCTTTTT
GTCACATTCACTACATTTGTAAGGTTTCTTTCCTGTATGAATTATTTGAT
GACTACTAACATTACATTTTTGGGTAAAGCATTTGTTACATTCACTACAT
TTGTAAGGCTTCTTTCCTGTATGAATTATCTGATGACTTCTAGGACTGTG
TTTGTCAGTACAGCATTTGTCACACTCACTACATTTATAAGGTTTCTCTC
CAGTATGAATTCTCTGATGAATACTAAGACTGTATTTGTGCAAAAAGCAT
TTGTCACATTCACTATATATGTAAGGTTTCTCTCCTGTATGGATTCTCTG
ATGTCTAAGCTTGCATTTCTTGGTGAAACATCTGGCACGTTCACTACATC
TGTAAGGTTTCTTTCCACTATTGGTTTGTTTCAGCCTGAGTATTTGCTTA
GAGTTAAAAACCTTATCAAGCACTATACCATTGTGTTCTTTCTTTCCTAT
GTGGATTCCTTGATGTAGACCAGTGATAGAACACAN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGACCTTCGGGAGAACA
GTTTGTGTCCTTGACGCTAAGCTACCTGTTCTCAGTTTTTACATTTGACC
TTTGGGCATCATGGTGCCCTGAGGGGACAAGAACAGGATAGGGAATCTGC
GCATGCTCACTCGCCGGAGGCGGGTTTAAGTCGTGTGTCAAGTATTTTTC
TTTTTGGAAGAAATGAAGATTTTACTTAAACTTTAGAAGAGATGAGAAAT
AAAACCCACGTTTTCCTGGGGAGCCACGAGCGTGCGCTGCGGCCCCCGCC
GAACTCCTCCCCGTTCCTCGCGCCAAACTGTGGTGGAGGGCAGGAAGCAG
AAACCGCGTCACAGCTTTTTAAAAGATTATTATTATTGATAATTAATAAT
GTTCAACCTCTGTCTCGCTGAAACCTGGAAATAAAGTTTCTTCCTCGGTT
CGTAAATGACTTACAGTGGCCACAGGGAGAAAACAAAGACCGAGGACCTC
TCAGAGGCCATGAAATGAATTTCTAACCTGGAGCCAGACTCTTGATCTTG
AACAGCGGAGGAGTCTAGCCTCGGCTCAGGATTGGAGTTCTCACCTGGAA
GTGGGGCTATCTGGGAGGCACGTAATAAACAGACACAGACTGCTTTTTTG
GGTGCAAGGTGACAGGCGGTTTTTCAAGGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_b04.b1 MSMg01no330_b04.b1 CHROMAT_FILE:
MSMg01no330_b04.b1 PHD_FILE: MSMg01no330_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:43 2005
         (689 letters)



>mm_chr17_22065308_22066396
          Length = 1089

 Score =  601 bits (311), Expect = e-176
 Identities = 605/723 (83%), Gaps = 61/723 (8%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgatgaatta-taaga-tcatatttgt-gagtgaagcatttgtcacattcac 61
           ||||||||||||| |||| ||||| |  | || || | || |||||||||||||||||||
Sbjct: 190 gaattctctgatg-attactaagagt-gtgttcgtag-gtaaagcatttgtcacattcac 246

                                                                       
Query: 62  tacattgataagggttt-tcccctgtatgaattctctgatgaacat--taagattatat- 117
           |||||| || ||||||| || |||||||||||||||||||||  ||  ||||     || 
Sbjct: 247 tacatttat-agggtttctctcctgtatgaattctctgatga--attctaag-----atg 298

                                                                       
Query: 118 --tttt--gggt-aaagcatttctcacattcactacatttgtaaggtttttctcctgtat 172
             ||||  |||| |||| |||| |||||||||||||||||||| ||||| ||||||||||
Sbjct: 299 gcttttccgggtaaaag-atttttcacattcactacatttgtacggtttctctcctgtat 357

                                                                       
Query: 173 aaa--ctctgatgaat------ag---ttttg--ggtaaagctttttgtcacattcacta 219
            ||  |||||||||||      ||   |||||  ||||||||  ||||||||||||||||
Sbjct: 358 gaattctctgatgaattcgatgagtatttttgaaggtaaagc-atttgtcacattcacta 416

                                                                       
Query: 220 catttgtaaggtttctttcctgtatgaattatttgatgactactaacattacattttt-- 277
           ||||| |||||||||| ||||||||||||| | |||||| | ||||  || |  ||||  
Sbjct: 417 catttataaggtttctctcctgtatgaattctctgatgaattctaaggttgc--ttttcc 474

                                                                       
Query: 278 gggt-aaagcatttgtt-acattcactacatttgtaaggcttctttcctgtatgaattat 335
           |||| |||| |||| || ||||| |||||||||||| || |||| ||| ||||||||| |
Sbjct: 475 gggtaaaag-attt-ttcacatttactacatttgtatggtttctctcccgtatgaattct 532

                                                                       
Query: 336 ctgatgacttctagg---actgtgttt---gtcagtacagcatttgtcacactcactaca 389
           ||||||| ||||| |   |||   |||   |   ||| ||||||||||||| ||||||||
Sbjct: 533 ctgatgaattctaagaacact---tttaaag---gtaaagcatttgtcacattcactaca 586

                                                                       
Query: 390 tttataaggtttctctccagtatgaattctctgatgaatactaagactgtatttgtgcaa 449
           ||| ||| ||||||| | |||||||| |||||||||||||||||||||||||||||  ||
Sbjct: 587 tttgtaaagtttctcactagtatgaaatctctgatgaatactaagactgtatttgtaaaa 646

                                                                       
Query: 450 aaagcatttgtcacattcactatatatgtaaggtttctctcctgtatggattctctga-- 507
           |||||||||||||||||||||| || |||||||||||||||| ||||| ||| |||||  
Sbjct: 647 aaagcatttgtcacattcactacatttgtaaggtttctctccagtatgaattgtctgatg 706

                                                                       
Query: 508 -tgtctaagcttgcatttcttggtgaaacatctggcacgttcactacatctgtaaggttt 566
            ||||||||||| |||||||||||||| ||||||| || |||||||||||||||||||||
Sbjct: 707 ttgtctaagcttacatttcttggtgaagcatctggaacattcactacatctgtaaggttt 766

                                                                       
Query: 567 ctttccactattggtttgtttcagcctgagtatttgcttagagttaaaaaccttatcaag 626
           ||||||||||||||||||||||||||  |||||||| ||||||| ||||||||||| |||
Sbjct: 767 ctttccactattggtttgtttcagcccaagtatttgtttagagtcaaaaaccttattaag 826

                                                                       
Query: 627 cactataccattgtgttctttctttcctatgtggattccttgatgtagaccagtgataga 686
           |||| | |||||||||||||||||||||||||||| |||||||| ||||||| || ||||
Sbjct: 827 cactgtcccattgtgttctttctttcctatgtggagtccttgatttagaccaatggtaga 886

              
Query: 687 aca 689
           |||
Sbjct: 887 aca 889



 Score =  166 bits (86), Expect = 4e-45
 Identities = 174/208 (83%), Gaps = 12/208 (5%)
 Strand = Plus / Plus

                                                                       
Query: 308 tgtaaggcttctttcctgtatgaattatctgatgacttctaggactgtgtttgtcagtac 367
           |||||||||||| |||||||||| ||||||||||| | ||| ||| |  |||||  ||| 
Sbjct: 1   tgtaaggcttctctcctgtatgagttatctgatgaatactaagaccgcctttgtgggtaa 60

                                                                       
Query: 368 agcatttgtcacactcactacatttataaggtttctctccagtatgaattctctgatgaa 427
           |||||||||||||||||||||||||||| ||||| ||||| ||||||||| | |||||||
Sbjct: 61  agcatttgtcacactcactacatttatatggtttttctcctgtatgaattttttgatgaa 120

                                                                       
Query: 428 tactaagactgta--ttt----gtgcaaaaagcatttgtcacattcactatatatgtaag 481
           || ||||| | ||  |||    ||    |||||||||||||||||||||| || ||||||
Sbjct: 121 taataaga-t-tacattttcgggt----aaagcatttgtcacattcactacatttgtaag 174

                                       
Query: 482 gtttctctcctgtatggattctctgatg 509
           | |||| ||||||||| |||||||||||
Sbjct: 175 gcttctgtcctgtatgaattctctgatg 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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