Query= MSMg01no330_o15.b1 MSMg01no330_o15.b1 CHROMAT_FILE:
MSMg01no330_o15.b1 PHD_FILE: MSMg01no330_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:44 2005
(290 letters)
>mm_chr17_76704731_76705420
Length = 690
Score = 538 bits (278), Expect = e-157
Identities = 287/290 (98%)
Strand = Plus / Minus
Query: 1 aagatgactgaagaatagaagcttattatcttgctggtggtaaaagaccagactgccact 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 490 aagatgactgaagaatagaagcttattatcttgctggtggtgaaagaccagactgccact 431
Query: 61 tttttagcacagtagaagaaaacattcatgtataaacccccaattgcgcagtaatcaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tttttagcacagtagaagaaaacattcatgtataaacccccaattgcgcagtaatcaaag 371
Query: 121 gaaactctttgggggcagattcttatatttgtagatatatttcttcagaatttcaaatac 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 370 gaaactctttgggggcagattcttatatttgtagatatatttcctcagaatttcaaatac 311
Query: 181 tattcagtgtttatgaaatatcattattatactctgtaaaggtagggcctttttagagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tattcagtgtttatgaaatatcattattatactctgtaaaggtagggcctttttagagtt 251
Query: 241 atttctttttttcttgagccagaattgttgaactcctatctcatgtaggc 290
||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 250 atttcttttttccttgagccagaattgttgaactcctatctcatgtaggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no330_o15.g1 MSMg01no330_o15.g1 CHROMAT_FILE:
MSMg01no330_o15.g1 PHD_FILE: MSMg01no330_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:44 2005
(560 letters)
>mm_chr17_76543573_76544532
Length = 960
Score = 1040 bits (538), Expect = 0.0
Identities = 553/559 (98%), Gaps = 2/559 (0%)
Strand = Plus / Plus
Query: 4 gctacttaatgaatctgacactatgtattttcatagcaattaatagtttaactgccactt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gctacttaatgaatctgacactatgtattttcatagcaattaatagtttaactgccactt 263
Query: 64 cagacataatctggtttgaacttcacaagtagctatgggataaaacttatcttgtttacc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cagacataatctggtttgaacttcacaagtagctatgggataaaacttatcttgtttacc 323
Query: 124 agtagctcccattaaaaacggtcattttattgatgagaagattagaggagcattgtgtag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtagctcccattaaaaacggtcattttattgatgagaagattagaggagcattgtgtag 383
Query: 184 tggttttagatgacttttggatctctctgcctttctctgtctctctgtctttgtctgttt 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 384 tggttttagatgacttttggatctctctgcctttctctgtctctctgtctttgtctgtct 443
Query: 244 ctgtctctctcagcctttttctctctctttgcctttgtctctcctccctctgtaatcctc 303
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgtctctctcagtctttttctctctctttgcctttgtctctcctccctctgtaatcctc 503
Query: 304 ttctcccctcctctccttcttctttttctaaaaagccttgttttacaggaaagctacatt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttctcccctcctctccttcttctttttctaaaaagccttgttttacaggaaagctacatt 563
Query: 364 ttggcatttcaattctttacttttccatgtctttgtataaat--gtttcatatcaatatc 421
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 564 ttggcatttcaattctttacttttccatgtctttgtataaatatgtttcatatcaatatc 623
Query: 422 atagaagatgtctttccagagttcttgtctataatttctcctctaanatagattccctag 481
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 624 atagaagatgtctttccagagttcttgtctataatttctcctctaaaatagattccctag 683
Query: 482 tcatttccttgtgacttaaggcctcttctgctagctctactgctggcctggaaatgaagc 541
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcatttccttgtgacttagggcctcttctgctagctctactgctggcctggaaatgaagc 743
Query: 542 tagggtactttatgcttct 560
|||||||||||||||||||
Sbjct: 744 tagggtactttatgcttct 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
