BAC Information

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BAC

Clone NameMSMg01-332E10
Chromosome17 (Build37)
Map Location 90,860,271 - 90,860,853
singlet/doubletsinglet
Overlap geneNrxn1
Upstream geneLOC100043906
Downstream geneEG668871, LOC668872, LOC627235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332E10.T7 (MSMg01no332_e10.b1)MSMg01-332E10.TJ (MSMg01no332_e10.g1)
ACCAG448351AG448352
length1,3171,310
length of high quality
(start - end)
583 (143 - 725)699 (94 - 792)
definitionCHROMAT_FILE: MSMg01no332_e10.b1 PHD_FILE: MSMg01no332_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:33 2005CHROMAT_FILE: MSMg01no332_e10.g1 PHD_FILE: MSMg01no332_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGCCGTTCTTGGNNNAACATTGGGCGCTAAXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCCACTTGGATTTCACTTAAACTGACTCCGCTGTAT
GNNGGNNCAGGNCAAANTTAGCCTTATAAACCTGATNTATATTACTCAGT
AGACTCTTAAGTAATAGACAGATTGACTATACATACCAGGCTGTGTCTGT
GACTGGATGATGGCTGTTTGGGGATGAAAACGAACTTCTATATCTATATA
CGAACTACACACAAAATGACTATTCTGCTACAGTTTTACCAGTATTAAGG
GAAAAACAACAACAACAAAGGGATTGCAGTAGATGCCCAAGGGTGCTTTT
TAAACTGTGGAATGTGGATTTCCTCCCTTCCTTTCTTAGTGTCCTTGTTC
TTCTGTACTGATCTTTCTCGAAATACCCTTCAGGACCTAACATCATATAT
AGAGGTAATAAGACCAGGAGTTTACCTTTAATAGAGTTCTCACCGCCTAT
TCTTTTGTGAGTCTTTCCCTCTTTTCTCCTTCAGTTCTGAGTACAGGCGG
GTGGAAATATGGGGTCAAGACTGGCATCTCCTCATTTTTATTTTTAAAAG
ATTAGTGCTGCCTGTGGGTTTTAATATACTTCCCCTCTGCTACATTAATG
TCTACTTTCCTATTTAAAAAGCTTAATACTGAGCCATAGGGATTTCCAAT
TAAGCTTAAGAAAGCCATGAAAAGCAAGCATTCTGTTCTTTAAGATAGAA
AGTGTAACTTTGGGATATGAGAAAATAATTTGAAATGGCCATTCCTGTTC
TATATCCTTCCAAATTTCACTCACTCTTCCGTCCCATTTCCTTTCCCTCC
CTTCTCCGACCTGAANAAGCTTATTTTTCACTGCTTAACGCTATTGTCCA
TCCCAGGCTATTTATGTGGNTGTTTATGGTAGATCATTGTTTGAGTTATC
TTGGGATGATTAAACGCACAAATCTATTTGGGTCCTTTGGGAAAAAACCC
GGAGCTATAGTTGTTTTAGGCGAGGGAAGGTTAACCCTCTTCCGATCCCC
CCAAGGTTTTAGTGGAGGCGAGAATAAATTCTTTTTTTTTTTAAGAAAAA
AATTAAAAAAAACGGGCTGGAATTGTGTAGCTCTTTTTGTAAGGGGGGGA
GGATTAGGCTTTCCTTCCTTTTTTTTTTTTTGGCTTTTTAAACAAAAAAA
AGGGGATTGGCAAAGGTTCCTCCCTTCTCTTACCGGGGGGGGGGAATGAA
GTTTATTCTCTCTTTGTGGTATGGAAAGAGAAAGATCCCCTTTGTGGTGG
TATAAGAAACGAGGCCA
NCCCCATCATTNNNNNAAAGCATGGAGNCTGGGGXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCAAGTGCCGAATACCG
AATGGCAGAGAAGCACCTGACCCTATGTTCAACATCCTTAATCATCAGGG
AAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATG
ACTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCATGGATGTGGAGA
AAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCAC
TCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCG
GAGGATCCAGCAATACCTCTCCTGGGCATATATTCAGAAGATGTCCCAAC
TGGTAAGAAGGACACATGCTTCACTATGTTCATAGCAGCCTTATTTATAA
TAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATA
CAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAA
GAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCA
TCCTGAGTGAGGTAACCAATTCACAAAGAAACTCACACAATATGTACTCA
CTGATAAGTGGATATTAGCCCCAAACCTAGGATGCCCAAGATATAAGATA
CAATTTGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGA
CACTATGCCCCTCCTTAGAAGTGGGAACAAAACACCCGTGGAAGGAGTTA
CAGAGACAAAGTTTGTAGCTGAGATCGAAGGATGGACCATGTATAGACTG
CCATATCCAGGGATCCACCCCATAATCAGCATCCAAACGCCTGACACCAT
TGGCATACCTAGCAAGATTTTATCGAAAGGACCCAGATGTACCTTGCTCC
TGCGAAACTATGCCCGGGCCTACCAAACTACAAATGCGGAAGCTTCACAA
CAATCTAATGGATGGATCCCTCGGGTTCCCTATGTAGGAACTAAAATAAA
AACCTCAGGAACTAAGGGAATCTGTCCCCCTCTAGTGGGAACATATTATT
AACTTACCAATTCCCCGGCAGCTCTTGACTCTTCCTACTAATTAAACAAA
GAGGCCCTAATCTTCCCTTACTGTTATAAAAGGCCATTTGTCATGTAACT
TTCATAGTCCCTTATCTCGATACACCTGTCCCCATATGACTATAAGTTGT
ACTTTCAATTCTATTTCAACTCCAACTCTTTCTCTCTCTTCCTCTTCCTG
TCTCATCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_e10.b1 MSMg01no332_e10.b1 CHROMAT_FILE:
MSMg01no332_e10.b1 PHD_FILE: MSMg01no332_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:33 2005
         (583 letters)



>mm_chr17_90860071_90861053
          Length = 983

 Score = 1011 bits (523), Expect = 0.0
 Identities = 568/583 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactcagtagactcttaagtaatagacagattgactatacataccaggctgtgtctgtga 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 tactcagaagactcttaagtaatagacagattgactatacataccaggctgtgtctgtga 724

                                                                       
Query: 61  ctggatgatggctgtttggggatgaaaacgaacttctatatctatatacgaactacacac 120
            |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 723 ttggatgatggctgtttggggatgaaaacgaacttctatatctatatacaaactacacac 664

                                                                       
Query: 121 aaaatgactattctgctacagttttaccagtattaagggaaaaacaacaacaacaaaggg 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 aaaatgacgattctgctacagttttaccagtattaagggaaaaacaacaacaacaaaggg 604

                                                                       
Query: 181 attgcagtagatgcccaagggtgctttttaaactgtggaatgtggatttcctcccttcct 240
           || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 603 atcgcagtagatgcccaagggtgcttttttaactgtggaatgtggatttcctcccttcct 544

                                                                       
Query: 241 ttcttagtgtccttgttcttctgtactgatctttctcgaaatacccttcaggacctaaca 300
           |||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||
Sbjct: 543 ttcttagtgtccttgttcttctgtactgatcaatctcaaaatacccttcaggacctaaca 484

                                                                       
Query: 301 tcatatatagaggtaataagaccaggagtttacctttaatagagttctcaccgcctattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 483 tcatatatagaggtaataagaccaggagtttacctttaatagagttctcaccgactatac 424

                                                                       
Query: 361 ttttgtgagtctttccctcttttctccttcagttctgagtacaggcgggtggaaatatgg 420
           ||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 423 ttttgtgagtccttccctcttttctccttcagttctgagtacaaacgggtggaaatatgg 364

                                                                       
Query: 421 ggtcaagactggcatctcctcatttttatttttaaaagattagtgctgcctgtgggtttt 480
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ggtcaagactgacatctcctcatttttatttttaaaagattagtgctgcctgtgggtttt 304

                                                                       
Query: 481 aatatacttcccctctgctacattaatgtctactttcctatttaaaaagcttaatactga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aatatacttcccctctgctacattaatgtctactttcctatttaaaaagcttaatactga 244

                                                      
Query: 541 gccatagggatttccaattaagcttaagaaagccatgaaaagc 583
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gccatagggatttccaattaagcttaagaaagccatgaaaagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)