Query= MSMg01no332_k02.b1 MSMg01no332_k02.b1 CHROMAT_FILE:
MSMg01no332_k02.b1 PHD_FILE: MSMg01no332_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:17 2005
(584 letters)
>mm_chr17_28420041_28421025
Length = 985
Score = 1094 bits (566), Expect = 0.0
Identities = 578/582 (99%), Gaps = 1/582 (0%)
Strand = Plus / Minus
Query: 4 ttttttttttttaaagaattagaagaggacattcagggctacacccagctgtacagaaag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 ttttttttttttaaagaattagaagaggacattcagggctacacccagctgtacagaaag 833
Query: 64 tttgaggccagcctgggttataggaaaccctatcaatacaacaaaaaccctcgtaaagta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 tttgaggccagcctgggttataggaaaccctatcaatacaacaaaaaccctcgtaaagta 773
Query: 124 caagaaaccgtgtgttaacataaaacacatcttctgtgagtaagatgtaggcctgacaat 183
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 772 caagaaaccgtgtgttaacataaaacacatcttttgtgagtaagatgtaggcctgacaat 713
Query: 184 aaactcataacagctttatgggtatcaaggttacaggtaaaagattaacagatttaatta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 aaactcataacagctttatgggtatcaaggttacaggtaaaagattaacagatttaatta 653
Query: 244 tataatagttctacagagttagagggaatttaaggacaagcaggttaaacccgaacccca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tataatagttctacagagttagagggaatttaaggacaagcaggttaaacccgaacccca 593
Query: 304 gctttgtctgcagccccgctgccagcaagtgcttctcaagcattcgggacccctggtctg 363
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 592 gctttgtctgcagccccgctgccagcgagtgcttctcaagcattcgggacccctggtctg 533
Query: 364 ggcaggcactgcacaggggaccagttccaaggttagcctaactacagagcaagtgtgaag 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 cgcaggcactgcacaggggaccagttccaaggttagcctaactacagagcaagtgtgaag 473
Query: 424 ccagcctaggcaacctgagacactgccttaaaacctaacctatcaaaccaattagacaat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ccagcctaggcaacctgagacactgccttaaaacctaacctatcaaaccaattagacaat 413
Query: 484 aagcagagaaaaatgcttccaac-tttatccaagtgctaagttccctaaaacagctcata 542
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 412 aagcagagaaaaatgcttccaacttttatccaagtgctaagttccctaaaacagctcata 353
Query: 543 aatttcttaataaagacgaattacgcaacctggacatggtgt 584
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aatttcttaataaagacgaattacgcaacctggacatggtgt 311
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 985
Length adjustment: 10
Effective length of query: 574
Effective length of database: 975
Effective search space: 559650
Effective search space used: 559650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_k02.g1 MSMg01no332_k02.g1 CHROMAT_FILE:
MSMg01no332_k02.g1 PHD_FILE: MSMg01no332_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:17 2005
(604 letters)
>mm_chr17_28247674_28248677
Length = 1004
Score = 1100 bits (569), Expect = 0.0
Identities = 595/609 (97%), Gaps = 10/609 (1%)
Strand = Plus / Plus
Query: 1 cacatgcctcaggcctcacagctcccaccttt-----aaaaggtgaggtttgggctcagg 55
||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 cacatgcctcaggcctcacagctccca-----gagggaaaaggtgaggtttgggctcagg 255
Query: 56 gatgtccagtcctgaagtgcgggttcttccagagctgtgtctggtggaagctggcagaag 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gatgtccagtcctgaagtgcgggttcttccagagctgtgtctggtggaagctggcagaag 315
Query: 116 gggccctaactcattactgcaggcctccaggggaggcagcccgggctctcttactggctc 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gggccctaactcattactgcaggcctccaggggaggcagcccgggctctcttactggctc 375
Query: 176 tcacctcaccccaaatcaacagtcagaggacagcaccattcctccagcccaatgtgtgcc 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tcacctcaccccaaatcaacagtcagaggacagcaccattcctccagcccaatgtgtgcc 435
Query: 236 aggagcctcttcaaagccacacagaattagagatgagaaataacgtcccacccaccctgc 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aggagcctcttcaaagccacacagaattagagatgagaaataacgtcccacccaccctgc 495
Query: 296 aggagatggtaggggcacggaggagctgttaccccagtgtgacacttcagggctgcattg 355
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 496 aggagatggtaggggcatggaggagctgggaccccagtgtgacacttcagggctgcattg 555
Query: 356 aggagctgggaccccagtgtgacacctcagggctgcaccaagggaaccagactgagaaga 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aggagctgggaccccagtgtgacacctcagggctgcaccaagggaaccagactgagaaga 615
Query: 416 aagcttggttttgcttggaaggagctgggcttccaccacaaatatgaaaggtgtcctgga 475
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 616 aagcttggttttgcttggaaggagctgggcttccaccacaaacatgaaaggtgtcctgga 675
Query: 476 ggctctgagccacttttagagagatgctcttttaagttgcccctaagcctaaggtcacaa 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ggctctgagccacttttagagagatgctcttttaagttgcccctaagcctaaggtcacaa 735
Query: 536 gctgtctgtcaacaggaaacccttccccgtgatgcctcttttccccccagtgggaaccag 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gctgtctgtcaacaggaaacccttccccgtgatgcctcttttccccccagtgggaaccag 795
Query: 596 aaacaagag 604
|||||||||
Sbjct: 796 aaacaagag 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
