TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCGNGACTCCGCGG
AATTCTTTGTATGTTCTCAAAAGCATAACTTAGTAGAGTTTGCAGAGCTG
TTGTGAAAGGTAGGCTTTGTGGAGAGAAGGCTTGTTCACACAACACTTCC
GATGTGTGCTTGTGAAACGCTTGTGTTAGGCTCTGTCCATTGGAAGTCTG
AAAAGGTCCTGTGGTTTTGGTTGTGTCTGCAATGCTCAGCTGTCCTATTT
TCGAGGGGCGTGACTGAGTGAAGGAGAAGGCTTGACTTGGGACAGTGTTG
AGGAATCTGCGCCTGTTATGTCTTATACTTAGAATCTTAAGAGGTTTGGT
AGTTTCATATTTGCTTACAAAGATCCCCACATGTCTGTGTGCGTGCATGC
TCATGAACTGGCTTATAAAACATTTGTGTGACATTTTCCCATAATGTATT
CTATATGCTAAACATAGTTTATGTACATACAGATACATATATGTAATCCC
ACAACTACAGAAGATGAAGGCAAGGGTTTTGGCCATTACAGCTATAAACG
CTGTGGGGTTTATTGGCTATGTGGTTCGTCGCATTTTATGTGGTTGTCCT
GTGTGCCCATTGACTGGAGCTAAGCAGCTTTGCTTTGCAGCTGAGATGCT
GGGACCTTTTTTTCACTGTCTTTGTTGCCTCTGTTGCTCATGCANNGAAC
ACCAAAGTATCTAAGTTTTATCAGAAGACGCG

NTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACTANGTGCACAAATGTGTTTCTACATCANCCCT
GTAAAAAAAAAAAACAATGATCCACCTTAATTGATTCTTCATCCAAAGCT
AATACACCTGCCCAAATTTCTCCTCTGCTCCTAAAAGGCTGATCTGCACA
CCTGNNCCACCACCTGCACANTCCCCCTGGTGCCCTGGNAAACAGCCCAC
GCNCACAAAAAAANNACACAACCCCCTAAATTTGAAGAAAGACCTTTTTT
CCTTACACCAAGCCCCCCTCGGGCCGCATNNCTTTACCTGAACTTNNCAA
AACCCACTTCCCCCATCCCTCCTTTCCCCCGCCCAAAAAAATTTTCCCAT
TTTTCTTTTCCCCCTTGTTTGCATGCTACAGCACTCNNNTNNNNNNNNNT
NNTTNNNNNNNNNNNNCCNNNNNNNNNCCCTCCTNNNNCCCCCCGGGCCC
CCCCCTTTTTNCCATTTTCCCCCCNNNNNNNNNNNTTAGGTAAATTATCC
TGNAAATTTTTTTTAAAGATGGGGGGGNNCCGNNNNTAATTTGTTTCAAA
AAATAGANGGTGGAAATTTAAGAGGGTGGAAGTCCTCGCCCCTTCCCCCC
TATATTTCCCTNCCCNCNNNTAAAGCCCCCCCTCCCCCCCTNCNCCCCTC
CTCCTTTCGCTAGGGGGGGTGGTTCGGGATTCGNTTTTNTNTNNNNNTNT
TCTTCATCTNTANTCCTTATANNANNNNNNNNNNNNNAAACAATTCCCGC
TCAAGTC

Query= MSMg01no333_j04.b1 MSMg01no333_j04.b1 CHROMAT_FILE:
MSMg01no333_j04.b1 PHD_FILE: MSMg01no333_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:47 2005
         (617 letters)



>mm_chr17_5045528_5046544
          Length = 1017

 Score = 1110 bits (574), Expect = 0.0
 Identities = 607/618 (98%), Gaps = 2/618 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataacttagtagagtttgcagagctgttgtgaaaggtaggctttgtggagagaaggctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataacttagtagagtttgcagagctgttgtgaaaggtaggctttgtggagagaaggctt 260

                                                                       
Query: 61  gttcacacaacacttccgatgtgtgcttgtgaaacgcttgtgttaggctctgtccattgg 120
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcacacaacacttcagacgtgtgcttgtgaaacgcttgtgttaggctctgtccattgg 320

                                                                       
Query: 121 aagtctgaaaaggtcctgtggttttggttgtgtctgcaatgctcagctgtcctattttcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtctgaaaaggtcctgtggttttggttgtgtctgcaatgctcagctgtcctattttcg 380

                                                                       
Query: 181 aggggcgtgactgagtgaaggagaaggcttgacttgggacagtgttgaggaatctgcgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggggcgtgactgagtgaaggagaaggcttgacttgggacagtgttgaggaatctgcgcc 440

                                                                       
Query: 241 tgttatgtcttatacttagaatcttaagaggttt-ggtagtttcatatttgcttacaaag 299
           |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 tgttatgtcttacacttagaatcttaagaggttttggtagtttcatatttgcttacaaag 500

                                                                       
Query: 300 atccccacatgtctgtgtgcgtgcatgctcatgaactggcttataaaacatttgtgtgac 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 atccccacatgtctgtgtgcgtgcatgctcatgaactggcttataaaacatttgtgtggc 560

                                                                       
Query: 360 attttcccataatgtattctatatgctaaacatagtttatgtacatacagatacatatat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attttcccataatgtattctatatgctaaacatagtttatgtacatacagatacatatat 620

                                                                       
Query: 420 gtaatcccacaactacagaagatgaaggcaagggttttggccattacagctataaacgct 479
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 gtaatcccacaactacagaagatgaaggcaagggttttggccgttacagctataaacgct 680

                                                                       
Query: 480 gtggggtttattggctatgtggttcgtcgcattttatgtggttgtcctgtgtgcccattg 539
           ||||||||||||||||||||||||| | |||||||||||||||||||| |||||| ||||
Sbjct: 681 gtggggtttattggctatgtggttcattgcattttatgtggttgtcctatgtgcc-attg 739

                                                                       
Query: 540 actggagctaagcagctttgctttgcagctgagatgctgggacctttttttcactgtctt 599
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 740 actggagctaagcagctttgctttgcagctgagatgctgggacctttttttcactgactt 799

                             
Query: 600 tgttgcctctgttgctca 617
           ||||||||||||||||||
Sbjct: 800 tgttgcctctgttgctca 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)