BAC Information

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BAC

Clone NameMSMg01-334C24
Chromosome17 (Build37)
Map Location 45,059,914 - 45,060,577
singlet/doubletsinglet
Overlap geneSupt3h
Upstream geneDscr1l1, Enpp5, Enpp4, Clic5, Runx2, 4930564C03Rik
Downstream geneEG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334C24.T7 (MSMg01no334_c24.b1)MSMg01-334C24.TJ (MSMg01no334_c24.g1)
ACCAG449747AG449748
length739736
length of high quality
(start - end)
662 (76 - 737)652 (73 - 724)
definitionCHROMAT_FILE: MSMg01no334_c24.b1 PHD_FILE: MSMg01no334_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:32 2005CHROMAT_FILE: MSMg01no334_c24.g1 PHD_FILE: MSMg01no334_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGATAACGCG
GAATTCAATAAGGCTTTGCAAGTATTGTGGCAGGATTATTTACAGGTTTT
CATAACTGTTATATGAGATATTGACATTAGAGAGAGCTGAATGGCATCTG
AGAACTCTATACCAGTTGTGGATATTTTCGTTACAGTCAAGTGAATTCTA
AGAAACCTTTGGTGAAAAGAATGCAGTTGTTAAAAGTACTGTTGCTAGGC
ATCATCCTTCTGTTAGAGTGAATCTGTTTACGCACTTAAACCAGAATTAT
CATATTTATGTCATATCTCAATAGTGCCTAAAATCTTGCTGCTAATTAAA
GCTTTGTTCTTTAATGTGTTGGGTTGGAACAACAATAGAAGCAGAATAAA
AAAGAGATACCAAATAGGGATGGTTCTGTGTGACCTTACCAGGTTAATTA
GTTGTGTATGAACCACATCTTCCACCAAAACTGCAGTTTCATGGAGAGGC
CTCCTAGCATCACCTAGAGAAAACCTGCAGGAAAAATAAAACACACCACT
ATTAAGGATGCAGACCAGGTACAGCAAATAATTAATATATACTTCTCATT
GTAAGGATCAGCTGTATAAAAGAGGCAATAAACTGCTCTTAAACAATTCA
ACAGTGCACACTTACTTCTAGTCTAAGAAAATAATGCCTTGTTTATAAAG
TGTAACTTGCCAAAAAAACATATTATTACCTGCAGTCCN
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTGCCGAATATCTTCCTCATTGGGAAGTGGTATTACTTG
AAAGAGATTAGGAGGTGTGTCCTTGCTGGAGTGGGTGTGGTCTTAGAGTG
GGTGAGGCCTTGATGGAGTGGGTGTGTCACTGGCCGGTGGGGAATCTCAG
AAGCCCAAGCCAAGCCCAGTGTCTTTTGCACTTCCTGCTGCCTGTGAATC
CAGATGTAGAAGCTTCAAGCTCCTTCTCCAGCACTTTGTCTGCCTGGATG
CTGCCAGACTTCCTGCCTGATGACTTTGTACTAAGCCTCTAAACTGTAAG
CCAGCCCCAATGAAATGCTTTTCTTTGTAAGAGTTGCCGTGGTCATGGTG
TCTTTTCACAGCAATAGAACATTGACTAAGTCACAAACATAATTAAAAAT
GAAATAAATCTTTTAAAGCATTATATTTAAAAAAAGAAGCCAGACAGAAA
TGACTACATATCATTTGTATTCATTCATAATAATAAAATGTCCATGTCCT
TCTATTGCTGTGATAAAACACCTTGACCAAAGGCATCCTGAGAAGTGAAG
GGTTTAGTTTGCTTACACTTCCACATCACAGCCTGTCATCAAAAGAAGTC
AGGGCAGGAACTCTGGAGGCAGGAACTGAATCAGAGGCCATGGAGGAACC
CTGCTTAGTGGCTTGCTCAGTGGCTTGCCCCTGAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_c24.b1 MSMg01no334_c24.b1 CHROMAT_FILE:
MSMg01no334_c24.b1 PHD_FILE: MSMg01no334_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:32 2005
         (662 letters)



>mm_chr17_45059714_45060777
          Length = 1064

 Score = 1230 bits (636), Expect = 0.0
 Identities = 657/664 (98%), Gaps = 2/664 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtggcaggattatttacaggttttcataactgttatatgagatattgacattagagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 tgtggcaggattatttacaggttttcataactgttatatgagatattgacattagagaga 805

                                                                       
Query: 61  gctgaatggcatctgagaactctataccagttgtggatattttcgttacagtcaagtgaa 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 804 gctgaatggcatctgagaactctataccagttgtagatattttcgttacagtcaagtgaa 745

                                                                       
Query: 121 ttctaagaaacctttggtgaaaagaatgcagttgttaaaagtactgttgcta-ggcatca 179
           ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 744 ttctaagaaacctttggtgaaaagaatgcagttgtaaaaagtactgttgctatggcatca 685

                                                                       
Query: 180 tccttctgttagagtgaatctgtttacgcacttaaaccagaattatcatatttatgtcat 239
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 684 tccttctgttagagtgaatctgtttacgcacttaaaccagaattattatatttatgtcat 625

                                                                       
Query: 240 atctcaatagtgcctaaaatcttgctgctaattaaagctttgttctttaatgtgttgggt 299
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atctcaatagtgccaaaaatcttgctgctaattaaagctttgttctttaatgtgttgggt 565

                                                                       
Query: 300 tggaacaacaatagaagcagaataaaaaagagataccaaatagggatggttctgtgtgac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tggaacaacaatagaagcagaataaaaaagagataccaaatagggatggttctgtgtgac 505

                                                                       
Query: 360 cttaccaggttaattagttgtgtatgaaccacatcttccaccaaaactgcagtttcatgg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cttaccaggttaattagttgtgtatgaaccacatcttccaccaaaactgcagtttcatgg 445

                                                                       
Query: 420 agaggcctcctagcatcacctagagaaaacctgcaggaaaaataaaacacaccactatta 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agaggcctcctagcatcacctagagaaaacctgcaggaaaaataaaacacaccactatta 385

                                                                       
Query: 480 aggatgcagaccaggtacagcaaataattaatatatacttctcattgtaaggatcagctg 539
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aggatgcagaacaggtacagcaaataattaatatatacttctcattgtaaggatcagctg 325

                                                                       
Query: 540 tataaaagaggcaataaactgctcttaaacaattcaacagtgcacacttacttctagtct 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tataaaagaggcaataaactgctcttaaacaattcaacagtgcacacttacttctagtct 265

                                                                       
Query: 600 aagaaaataatgccttgtttataaagtgtaacttgcc-aaaaaaacatattattacctgc 658
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 264 aagaaaataatgccttgtttataaagtgtaacttgccaaaaaaaacatattattacctgc 205

               
Query: 659 agtc 662
           ||||
Sbjct: 204 agtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1064
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1054
Effective search space:   687208
Effective search space used:   687208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)