Query= MSMg01no335_f22.b1 MSMg01no335_f22.b1 CHROMAT_FILE:
MSMg01no335_f22.b1 PHD_FILE: MSMg01no335_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:06 2005
(584 letters)
>mm_chr17_52304409_52305391
Length = 983
Score = 1046 bits (541), Expect = 0.0
Identities = 568/579 (98%), Gaps = 5/579 (0%)
Strand = Plus / Minus
Query: 6 gaattcaaagactac--tttaccgagtttgaggctgggcaacttagcaaaagatcctacc 63
||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 781 gaattcaaagactacag---agggagtttgaggctgggcaacttagcaaaagatcctacc 725
Query: 64 tcaaacttttttaaaaaaaaggtctgggtatgagacacagtggtagagcacaggagcagc 123
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 tcaaactttttttaaaaaaaggtctgggtatgagacacagtggtagagcacaggagcagc 665
Query: 124 ctgcaagaggctgtacgtccagtcccccaaatggccccgaaattctgtgtcctgatggtg 183
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ctgcaagagactgtacatccagtcccccaaatggccccgaaattctgtgtcctgatggtg 605
Query: 184 cctaggtttctttatgccaaggctatgagatgatctgaatggtgttgagcccactagctg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 cctaggtttctttatgccaaggctatgagatgatctgaatggtgttgagcccactagctg 545
Query: 244 tgcacacagttttagacatcgaaaggcatatactctacgatgatgttcacactgccacag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tgcacacagttttagacatcgaaaggcatatactctacgatgatgttcacactgccacag 485
Query: 304 atgcagtcccaactgtgttgtccgccctgcattgttaataataatggctatcattactgc 363
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 484 atgcagtcccaactgtgttgtccgtcctgcattgttaataataatggctatcattactgc 425
Query: 364 tgattgtaacagtaactctgaacaaagcaagattcttgctaatgatgattatgagaatac 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgattgtaacagtaactctgaacaaagcaagattcttgctaatgatgattatgagaatac 365
Query: 424 taagaattctaaactaaaataacaacataatttcaggttttaatcctaacaggctggaaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 taagaattctaaactaaaataacaacataatttcaggttttaatcctaacaggctggaaa 305
Query: 484 ttaaatgtgggcccagaagtcaaggaaactgatgcctagtctacataatagcctccaaac 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ttaaatgtgggcccagaagtcaaggaaactgatgcctagtctacataatagcctccaaac 245
Query: 544 cattatttctctctcgtgttaaaaattaagttgagagca 582
|||||||||||||||||||||||||||||||||||||||
Sbjct: 244 cattatttctctctcgtgttaaaaattaagttgagagca 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 983
Length adjustment: 10
Effective length of query: 574
Effective length of database: 973
Effective search space: 558502
Effective search space used: 558502
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_f22.g1 MSMg01no335_f22.g1 CHROMAT_FILE:
MSMg01no335_f22.g1 PHD_FILE: MSMg01no335_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:06 2005
(580 letters)
>mm_chr17_52114812_52115791
Length = 980
Score = 1031 bits (533), Expect = 0.0
Identities = 569/581 (97%), Gaps = 2/581 (0%)
Strand = Plus / Plus
Query: 1 tcataggatgcagacatgagagaggccctctgagggtttatgacctagtcatgaagttgg 60
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 201 tcataggatgcagacatgagagaggccctccgagggtttatgacctagtcgtgaagttgg 260
Query: 61 atatagaaaagcaactaaagaagatagactagctagtgagactaaatgggttttagaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatagaaaagcaactaaagaagatagactagctagtgagactaaatgggttttagaaat 320
Query: 121 ggctgtatacatgagaaggatgctggaggcaaatgaagaaacacaaagacacgaggctta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctgtatacatgagaaggatgctggaggcaaatgaagaaacacaaagacacgaggctta 380
Query: 181 gagctgtgggttagagagtgagcctactgtgggtcaacatgatgcgaagattgctgacct 240
||||||||||| ||||||||||||||| |||||||||||||||| |||||||||| ||||
Sbjct: 381 gagctgtgggtcagagagtgagcctaccgtgggtcaacatgatgggaagattgctcacct 440
Query: 241 tacaa-gtctttattttgttggtcacccaataatattcacttatgttttaatgccgggtt 299
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacaaagtctttattttgttggtcacccaataatattcacttatgttttaatgccgggtt 500
Query: 300 tccaaactacctgaaaaaatagagttgtatattttcctcctaagggaacaaggtgaaata 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccaaactacctgaaaaaatagagttgtatattttcctcctaagggaacaaggtgaaata 560
Query: 360 tatgtcactcaacaggacaaagctaactttctcttaattaaaggatactgtttgcttata 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatgtcactcaacaggacaaagctaactttctcttaattaaaggatactgtttgcttata 620
Query: 420 acatttttttctttcacagggactcagtcttgattgtcctcaataaaagctaaaaccaca 479
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acatttttc-ctttcacagggactcagtcttgattgtcctcaataaaagctaaaaccaca 679
Query: 480 ctcttgacatgtgacttaagactgttctgagctcacaacagtgaatcttcattctggaaa 539
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 680 ctcttgacatgtgacttaagactgttctgagctcacgacagtgaatcttcattctggaaa 739
Query: 540 acttaggacgatttattttattccatcttgctcctttactt 580
||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 740 acttaggacgatttattttattccaccttgttcctttactt 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
