Query= MSMg01no335_l21.b1 MSMg01no335_l21.b1 CHROMAT_FILE:
MSMg01no335_l21.b1 PHD_FILE: MSMg01no335_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:36 2005
(513 letters)
>mm_chr17_68521734_68522646
Length = 913
Score = 886 bits (458), Expect = 0.0
Identities = 504/528 (95%), Gaps = 16/528 (3%)
Strand = Plus / Minus
Query: 1 cagacgctggccatccaacatcagggtgtcagtgtggttcatgctctctctgaggtacc- 59
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 786 cagacgctggccatccaacatcagggtgtcagtgtggttcgtgctctctctgaggtaccc 727
Query: 60 -------------ctgcctg-ccagctcagattgggttccctgtggcttgggtctttgtg 105
||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 726 tggagaacactctctgcctgtccagctcaggttgggttccctgtggcttgggtctttgtg 667
Query: 106 gctgcttctctgctttaccgtcattcccaatccatcgtcagggtacccacttcccttttg 165
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 666 gctgcttctctgctttaccatcattcgcaatccatcgtcagggtacccacttcccttttg 607
Query: 166 tctctaaataaggaaaccgcaacttgggccttggctggatgctccaaaaagacctcatgg 225
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tctctaaataaggaaaccgaaacttgggccttggctggatgctccaaaaagacctcatgg 547
Query: 226 tcagattcttaacttatgtaaataagattctcatctccaaagagtgtcacaatcaccggt 285
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 546 tcagattcttaacttatgtaaataagaacctcatctccaaagagtgtcacaatcaccggt 487
Query: 286 gacaggggtcagaacatgcacaaaactcttgggtccatccttctactcacaatgggtaaa 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gacaggggtcagaacatgcacaaaactcttgggtccatccttctactcacaatgggtaaa 427
Query: 346 gggctcaggctaagaagtgagcagggaggcctcttttcttttcttcctactgggaaataa 405
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gggctca-gctaagaagtgagcagggaggcctcttttcttttcttcctactgggaaataa 368
Query: 406 aggtgttttttgctgcagagttcttggttccctggtgctttctgaaccttgagcaccacc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aggtgttttttgctgcagagttcttggttccctggtgctttctgaaccttgagcaccacc 308
Query: 466 tctatgtacacaatagaaagaacaaaaagcccaatcagggcaaacaga 513
||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 307 tctatgtacacaaaagaaagaacaaaaagcccaatcagggcaaacaga 260
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_l21.g1 MSMg01no335_l21.g1 CHROMAT_FILE:
MSMg01no335_l21.g1 PHD_FILE: MSMg01no335_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:36 2005
(480 letters)
>mm_chr17_68387562_68388441
Length = 880
Score = 920 bits (476), Expect = 0.0
Identities = 479/480 (99%)
Strand = Plus / Plus
Query: 1 catgtggaagggaatgctagctgagtgtgctttctctcagctttacatgcaagccagttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgtggaagggaatgctagctgagtgtgctttctctcagctttacatgcaagccagttg 260
Query: 61 tcacaggaccgagagctaagggccccattaagagagtcccactgtcctaggttccaggtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 tcacaggaccgagagctaagggccccattaagagagtcccactgtcctaggctccaggtc 320
Query: 121 gtcctttagcttgatggacttgggtgtgtcatgagctttcagctttttctaaccaagggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcctttagcttgatggacttgggtgtgtcatgagctttcagctttttctaaccaagggg 380
Query: 181 agcttgttttttaggacagcgtaggctgcacaatgagaccctttctgaaaaagaaaatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcttgttttttaggacagcgtaggctgcacaatgagaccctttctgaaaaagaaaatat 440
Query: 241 gtattcaaatccaataaaaccagctcacagatctacataacgccctcctatgattagcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtattcaaatccaataaaaccagctcacagatctacataacgccctcctatgattagcag 500
Query: 301 ggacaagcacttccaataccagggtttttgatttcgagagaccctagatccctgtccaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggacaagcacttccaataccagggtttttgatttcgagagaccctagatccctgtccaac 560
Query: 361 atctgaccttgtcactttaataagtcaggttaatctttctctcttactttctcagcaagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atctgaccttgtcactttaataagtcaggttaatctttctctcttactttctcagcaagc 620
Query: 421 atccatgggtaatgggccacttatggtggcctctaccatggcacactcatcaggacttgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atccatgggtaatgggccacttatggtggcctctaccatggcacactcatcaggacttgg 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
