Query= MSMg01no335_n13.b1 MSMg01no335_n13.b1 CHROMAT_FILE:
MSMg01no335_n13.b1 PHD_FILE: MSMg01no335_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:44 2005
(556 letters)
>mm_chr17_51526776_51527731
Length = 956
Score = 936 bits (484), Expect = 0.0
Identities = 534/556 (96%), Gaps = 9/556 (1%)
Strand = Plus / Plus
Query: 1 agttttttcttctcatgaaatttactctttccagtgttctcatgattgacactgtcttcc 60
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 agtttattcttctcatgaaatttactctttccagtgttctcatgactgacactgtcttcc 260
Query: 61 tcctgtatgtagattattcttttaaaatatctggtttgctgacttgacgtttgttttgaa 120
||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||
Sbjct: 261 tcctgtatgtagattattcttttaaaagatctgatttgctgacttgatgtttgttttgaa 320
Query: 121 atgtacttatttctctgtcaattttaaatgctaactcagatgaacatagtactcctagtt 180
|| |||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||
Sbjct: 321 atatacttatttctctgtcaattttaaatactaactcaggtgaacataggactcctagtt 380
Query: 181 ggtatctatttaccttctaatgctgagtatatcacaacatggtttcttggcttttaggat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtatctatttaccttctaatgctgagtatatcacaacatggtttcttggcttttaggat 440
Query: 241 ttctaatgatagatttgatgttgtatttgcccatgtacataagttatctccttcttacag 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctaatgagagatttgatgttgtatttgcccatgtacataagttatctccttcttacag 500
Query: 301 ctttcagtattttcctttgcttactcctaacatctcgattagattgtatcatagggatgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttcagtattttcctttgcttactcctaacatctcgattagattgtatcatagggatgc 560
Query: 361 tcttctctggccttgtcccattttatattctaaatgccttgtatttggacatccatttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 tcttctctggccttgtcccattttatattctaaatgccttgtatttggacatcaatttat 620
Query: 421 ttatttagatttgagattttctgctgtgatattattgagtaaattctatgtcttctttga 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 ttatttagatttgagattttctgctgtgatattattgagtaaattct---------ttga 671
Query: 481 tgtttttaactttactctcagatcctaccagtcaccaagagctgggctactgtcttaatt 540
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tgttattaacttgactctcagatcctaccagtcaccaagagctgggctactgtcttaatt 731
Query: 541 agcttcagcatcagct 556
||||||||||||||||
Sbjct: 732 agcttcagcatcagct 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_n13.g1 MSMg01no335_n13.g1 CHROMAT_FILE:
MSMg01no335_n13.g1 PHD_FILE: MSMg01no335_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:45 2005
(544 letters)
>mm_chr17_51693574_51694518
Length = 945
Score = 988 bits (511), Expect = 0.0
Identities = 535/543 (98%), Gaps = 1/543 (0%)
Strand = Plus / Minus
Query: 1 aggatacctttccttcctctctgactagcctttaaaactttcaagggttctgggtttggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aggatacctttccttcctctctgactagcctttaaaactttcaagggttctgggtttggt 684
Query: 61 ctccaccagcaagcagggttgggtgggctttcgcaatagtcatgaaaatctacccacagg 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctccaccagcaagcagggttgggcgggctttcgcaatagtcatgaaaatctacccacagg 624
Query: 121 ttttgaatgttagggggcagagggaagaggggacacacacaagtacacaaaaggcccttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttttgaatgttagggggcagagggaagaggggacacacacaagtacacaaaaggcccttt 564
Query: 181 tgtaattgagggtgaattggttcttgtgcagtcacagttgtttgggtgtgagtgaaacag 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 563 tgtaattgagggtgaattggttcttgtgcaggcacagttgtttgggtgtgagtgaaacag 504
Query: 241 cctgggtctctgcagcctctattcagaaatgcgctgcatgcaaataggtgcttgccagaa 300
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 503 cctgggtctctgcagcctctattcagaaatgcactgcatgcaaataggtgcttgacagaa 444
Query: 301 cagtgagctaggtgttgagtagggtggagcctgtgtcaaaagactacaacccactgggct 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cactgagctaggtgttgagtagggtggagcctgtgtcaaaagactacaacccactgggct 384
Query: 361 tgtgggaaggctgggctgagacacctagataacagcaagagagaaaatgcagtcatgttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgtgggaaggctgggctgagacacctagataacagcaagagagaaaatgcagtcatgttt 324
Query: 421 acactaaagtaagtcaaatacatttgcttatctgaccattgtgctaaagtt-aaaatggc 479
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 323 acgctaaagtaagtcaaatacatttgcttatctgaccattgtgctaaagttaaaaatggc 264
Query: 480 tgggaaaagtcccttgaaacacttattcttcctgaccaaatgagaacgaaggaagaaaaa 539
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 263 tgggaaaagtcccttgaaacacttattcttcctggccaaatgagaacgaaggaagaaaaa 204
Query: 540 aaa 542
|||
Sbjct: 203 aaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 945
Length adjustment: 10
Effective length of query: 534
Effective length of database: 935
Effective search space: 499290
Effective search space used: 499290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
