BAC Information

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BAC

Clone NameMSMg01-336P15
Chromosome17 (Build37)
Map Location 27,362,675 - 27,363,188
singlet/doubletsinglet
Overlap genenone
Upstream geneItfg3, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2
Downstream geneLOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336P15.T7 (MSMg01no336_p15.b1)MSMg01-336P15.TJ (MSMg01no336_p15.g1)
ACCAG451866AG451867
length745753
length of high quality
(start - end)		587 (41 - 627)515 (68 - 582)
definitionCHROMAT_FILE: MSMg01no336_p15.b1 PHD_FILE: MSMg01no336_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:12 2005CHROMAT_FILE: MSMg01no336_p15.g1 PHD_FILE: MSMg01no336_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CATGATTGCGGGCCCACTGTCGTACTTCTCTGGCTGTGAAATGAGTTCCT
TGGTCAGAAGCAATACTGTGTGGAATACCATGACGATAGATAAGGCATTC
TGTCAATCCGCGAATGGTGGTTTTAGCAGAGGCATTACGTGCAGGAAAGG
CAAATCCATAACCAGAATAAGTATCTACTCCAGTAAGAACAAAACGCTGT
CCTTTCCACGAAGGAAGTGGTCCAATGTAGTCAACCTGCCACCAGGTTGC
TGGCTGGTCACCTCGAGGAATGGTGCCATATCTGGGGCTCAGTGTTGGTT
TCTGCTGTTGGCAGATCTGGCAATCAGCAGCAGCTGTAGCCAGGTCAGCC
TTGGTGAGTGGAAGCCCGTGTTGCTGAGCCCAAGCATAACCTCCATCTCG
ACCACCATGGCCACTTTGTTCATGTGCCCATTGAGCAATGACAGGGATGG
CTGGGGAGAGAGACTGACTGTCCACAGAACGGGTCATCTTATCCACTTGA
TTATTGAACTCCTCCTCTGCTGAAGTCACCTTTTGGTGAGCATTTACATG
GGACACAAATATCTTCACATCCTTTGCCCATTTGGAGAGATCTATCCACA
TACTTCTTTCCCAGATGTCTTTCTCACCAATTTCCAATTGTGGATCTTTC
AAGACCCTGAGCATCCCGCCCATCCATTGGTTACAGCCCATGAGT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTTGTGCCCCAGGGGACACTGTCTATGGTGAC
CTGTGTGACTCTAGATCTTCTCTTCTCTTGTTATTTCCAGAGCTCACAAA
TGATTCAGAGTACAGCCACCACCACCAGAACCCCATGGCAGGAGACAGGG
AGGGAGGGAGGGAGGNGAGGGAGAGAGGGAAGGACACAGCCAAAGAAAGG
ATCCATCTTGCACTAATTTCCAATTTGCGGAGTGGCTTGTTTGAGTGTGA
CATCTGCTGCTGTTTTTAACATCTCGGCATCACCAATTTCCCGTGGAGTC
CACAGAACACGCACGGGAAGCCTGGACCCTAAACAATCGGATAAAAGGCA
TTCCTCTTGGGTTCGGCATCGCAGACTATTGACTCTGGGTGCGAGCCACC
TGAGCCTCAGCACAGATTTACACAGCACCCCTGCTGACTCCCTGTTCAAT
ATGTCCCTGGGTGGTTGAAATACTTCTAGAAATGTCTCAGTCCCTAGCTT
GTTTTCTGGGTTCCCTTTCTATTTATGGAAGTTTATCGCAAATGCTGCCA
TTATAAAACTTTAAGAGGTGACAGATGACTTTGGTTCTAAGGACAGAGTT
TTGAGAGCAGGCCCCAGGACAGGAAATCTTTGGGGGGGAGGGGGTTCTTT
CCGCCTCTGACGGTGAGTCCATCTAAGGGAATAAAAACCTTTTTAGATGA
ATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_p15.g1 MSMg01no336_p15.g1 CHROMAT_FILE:
MSMg01no336_p15.g1 PHD_FILE: MSMg01no336_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:12 2005
         (515 letters)



>mm_chr17_27362475_27363389
          Length = 915

 Score =  949 bits (491), Expect = 0.0
 Identities = 509/515 (98%), Gaps = 1/515 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttgtgccccaggggacactgtctatggtgacctgtgtgactctagatcttctcttctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttgtgccccaggggacactgtctatggtgacctgtgtgactctagatcttctcttctc 260

                                                                       
Query: 61  ttgttatttccagagctcacaaatgattcagagtacagccaccaccaccagaaccccatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgttatttccagagctcacaaatgattcagagtacagccaccaccaccagaaccccatg 320

                                                                       
Query: 121 gcaggagacagggagggagggagggaggngagggagagagggaaggacacagccaaagaa 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| 
Sbjct: 321 gcaggagacagggagggagggagggagg-gagggagagagggaaggacacagccaaagag 379

                                                                       
Query: 181 aggatccatcttgcactaatttccaatttgcggagtggcttgtttgagtgtgacatctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aggatccatcttgcactaatttccaatttgcggagtggcttgtttgagtgtgacatctgc 439

                                                                       
Query: 241 tgctgtttttaacatctcggcatcaccaatttcccgtggagtccacagaacacgcacggg 300
           |||||   |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 440 tgctggcattaacatctcggcatcgccaatttcccgtggagtccacagaacacgcacggg 499

                                                                       
Query: 301 aagcctggaccctaaacaatcggataaaaggcattcctcttgggttcggcatcgcagact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aagcctggaccctaaacaatcggataaaaggcattcctcttgggttcggcatcgcagact 559

                                                                       
Query: 361 attgactctgggtgcgagccacctgagcctcagcacagatttacacagcacccctgctga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 attgactctgggtgcgagccacctgagcctcagcacagatttacacagcacccctgctga 619

                                                                       
Query: 421 ctccctgttcaatatgtccctgggtggttgaaatacttctagaaatgtctcagtccctag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctccctgttcaatatgtccctgggtggttgaaatacttctagaaatgtctcagtccctag 679

                                              
Query: 481 cttgttttctgggttccctttctatttatggaagt 515
           |||||||||||||||||||||||||||||||||||
Sbjct: 680 cttgttttctgggttccctttctatttatggaagt 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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