Query= MSMg01no337_h01.b1 MSMg01no337_h01.b1 CHROMAT_FILE:
MSMg01no337_h01.b1 PHD_FILE: MSMg01no337_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:49 2005
(515 letters)
>mm_chr17_91379087_91380001
Length = 915
Score = 911 bits (471), Expect = 0.0
Identities = 505/521 (96%), Gaps = 11/521 (2%)
Strand = Plus / Plus
Query: 4 ggaattctcaactgag-caatgctgaatggctgagaagcacctaaaaaatgttcaacatt 62
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ggaattctcaactgaggca-tgctgaatggctgagaagcacctaaaaaatgttcaacatt 255
Query: 63 tatagtcatccgggaaatgcaaatcaaaacagccctgagtttccacctcacaccagtcag 122
|||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 256 tatagtcatccgtgaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcag 315
Query: 123 aatggctaatatcaaaaactcaggtgacagcagatggtggtgaggatgtggagaaagagg 182
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 a-tggctaatatcaaaaactcaggtgacagcagatggtggtgaggatgtggagaaagagg 374
Query: 183 aacactccttcattgctggtgggattgcaagctgttacaatgagtctggaaatcaatttg 242
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 375 aacactccttcattgctggtgggattgcaagctggtacaatgagtctggaaatcaatttg 434
Query: 243 gcagttccttagaaattcggacatagtactacctgaggacccagcaataccagacctggg 302
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gcagttccttagaaatttggacatagtactacctgaggacccagcaataccagacctggg 494
Query: 303 catatacccagaagatgcttcaacatatgataaggacacatgctacactataatcttttt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 catatacccagaagatgcttcaacatatgataaggacacatgctacactataatcttttt 554
Query: 363 taaagaagcaaagcaattaaccaaaaaaaaaaaaaaa--------gccaaaagcaacctg 414
||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 555 taaagaagcaaagcaattaaccaaaaaaaaaaaaaaaaaaaaaaagccaaaagcaacctg 614
Query: 415 agcattttcttgtaaagcaattggaacaaatgtctcatttgattatattaaaactattgt 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 agcattttcttgtaaagcaattggaacaaatgtctcatttgattatattaaaactattgt 674
Query: 475 tagtaagacttgataaccttattcaaggaaatttttgctgt 515
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tagtaagacttgataaccttattcaaggaaatttttgctgt 715
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_h01.g1 MSMg01no337_h01.g1 CHROMAT_FILE:
MSMg01no337_h01.g1 PHD_FILE: MSMg01no337_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:49 2005
(482 letters)
>mm_chr17_91561605_91562486
Length = 882
Score = 901 bits (466), Expect = 0.0
Identities = 475/478 (99%)
Strand = Plus / Minus
Query: 1 agaaagaaactaattattttggtctctgtccatgttgttgaattttatttttaattttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 agaaagaaactaattattttggtctctgtccatgttgttgaattttatttttaattttcc 619
Query: 61 tcagctttcaaaggaatagacatttacatatatctgtaagtgcataactatatatttgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tcagctttcaaaggaatagacatttacatatatctgtaagtgcataactatatatttgca 559
Query: 121 aacatgcgtatccacacatgtatagttccattcatatgaaatcatgtacaaaatcgactg 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aacacgcgtatccacacatgtatagttccattcatatgaaatcatgtacaaaatcgactg 499
Query: 181 ctattgcagctgtcaaaatctcttcctgcatttgataccatttttgtcttagagaaagtg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gtattgcagctgtcaaaatctcttcctgcatttgataccatttttgtcttagagaaagtg 439
Query: 241 aagggagaaatgccaataaattattcattacagcaatctgaggatagctcagcaaacaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aagggagaaatgccaataaattattcattacagcaatctgaggatagctcagcaaacaag 379
Query: 301 gaggacaatagggcactctggaagaaaatttattaaaacaataaaaatttccacagataa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gaggacaatagggcactctggaagaaaatttattaaaacaataaaaatttccacagataa 319
Query: 361 cctacttcacacttgatttttccaagtaattaactttttcacaaatgcatctcccaaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cctacttcacacttgatttttccaagtaattaactttttcacaaatgcatctcccaaatt 259
Query: 421 taatttgatatttatggcattaatctaaaagataatgcattttctacaatattttttt 478
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 258 taatttgatatttatggcattaatctaaaagaaaatgcattttctacaatattttttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
