BAC Information

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BAC

Clone NameMSMg01-338C02
Chromosome17 (Build37)
Map Location 61,344,302 - 61,344,705
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043549
Downstream geneLOC433129, EG620725, LOC100043560
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338C02.T7 (MSMg01no338_c02.b1)MSMg01-338C02.TJ (MSMg01no338_c02.g1)
ACCAG452738AG452739
length731743
length of high quality
(start - end)
674 (44 - 717)404 (67 - 470)
definitionCHROMAT_FILE: MSMg01no338_c02.b1 PHD_FILE: MSMg01no338_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:41 2005CHROMAT_FILE: MSMg01no338_c02.g1 PHD_FILE: MSMg01no338_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTTACCTTTGAGCCCCATATTTTAATGTGGTTATTTGATTTTC
TGGAGTCCACCTTCTTAAGTTCTTTATATATATTGGGTATTAGTCCCCTA
TCTGATTTGGAATAGGTAAAGATACTTTCCCAATCTGTTGCTGGCCTGTT
CGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGA
GGTCCCATTTGTTGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTA
TTCAGGAATTTTTCTTTTGTATCCATATCTTCGAGGCTTTTCCCTACTTT
CTCTTCTATAAGTTTCAGTGTCTCTGGTTTATGTGGAGTTCCTTAATCCA
CTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCGAAATC
TTCTACATGTTAACAACCAGTTGTGCCAGCATCATTTTTTGAAAATGCTG
TCTTTTTTCTACTGGAGGGTTTTTGCTCCCTTGTCAAATATCAAGTGACC
ATAGATGTGTGGGTTCATTTCTGGGTCTTCGATTCTATTCCACTGGTCTA
CTTTTCTGTAGCTATACCAGTACCATGCATTTTTTTTATCACAATTGCTC
TGTAGTACAACTTTAGGTCAGGTATTGTGATTTCTCGAGAGGTTATTTTA
TCCTTGAGCAGTGTTTTTGCTCTTCTAGGTN
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTTTCCAGTCATAGCACTATGCCAATATATCCC
ATGGGAATATTAATCTTCCTTAGAAGTTCCAGTGACACAAAAGCAAAAGC
AAGTGACACAAAAGCAAACATTGAGGGTATGTATAAAGATGTTCTTTCTG
TGATCTGTAACAGAAAGAGTTTCCCAGAGCAGCCAGTGTGATGAGTAGAC
ACCCACTTTAGTTACTGTGTCAGTACCAGTTCTGTCAATGTTGGAAGTGC
ACCACACGTGGTGATTTAAGTCAGAATAATTCCTATAGGTTGATCTCTAT
GAATGCTTAGTCACCAAGAAGTGGAAAGGTTTGTAAAGATTACATGGATT
AGGGGTGTGGCCTTGTCAGAGAAGGTGTGGCCTTGTTGGACGAAGTGTGT
GACTTGGAAAGGCTTTATGGTTTCCAAAGCCCATGTTAGCACCAGAGTAT
CTCTCTGGGTCAGGATTGTACTCACAGCTCCTGCACCAACACATGCCTGG
CTGCTTTCATGATTGATGCCGTGATGAAACTGGTTGGAATTCCTGGAACG
GTAAACAAGTCGCCAATTAAACACTTTCCCTTATAATAGCTATTTGATTA
TGCTGTCCTTTCCCAGCCATAGAACAGAGACTAACCCGTCTTTGTTCCTT
ACCATAAAAATAAGAAATTGTATATGGTGGCGACTTGAAACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_c02.g1 MSMg01no338_c02.g1 CHROMAT_FILE:
MSMg01no338_c02.g1 PHD_FILE: MSMg01no338_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:42 2005
         (404 letters)



>mm_chr17_61344102_61344905
          Length = 804

 Score =  766 bits (396), Expect = 0.0
 Identities = 402/404 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttccagtcatagcactatgccaatatatcccatgggaatattaatcttccttagaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttccagtcatagcactatgccaatatatcccatgggaatattaatcttccttagaag 260

                                                                       
Query: 61  ttccagtgacacaaaagcaaaagcaagtgacacaaaagcaaacattgagggtatgtataa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 ttccagtgacacaaaagcaaaagcaagtgacacaaaagcaaacattgagggtatgtgtaa 320

                                                                       
Query: 121 agatgttctttctgtgatctgtaacagaaagagtttcccagagcagccagtgtgatgagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatgttctttctgtgatctgtaacagaaagagtttcccagagcagccagtgtgatgagt 380

                                                                       
Query: 181 agacacccactttagttactgtgtcagtaccagttctgtcaatgttggaagtgcaccaca 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 agacacccactttagttactgtgtcagtaccagttctgttaatgttggaagtgcaccaca 440

                                                                       
Query: 241 cgtggtgatttaagtcagaataattcctataggttgatctctatgaatgcttagtcacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgtggtgatttaagtcagaataattcctataggttgatctctatgaatgcttagtcacca 500

                                                                       
Query: 301 agaagtggaaaggtttgtaaagattacatggattaggggtgtggccttgtcagagaaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaagtggaaaggtttgtaaagattacatggattaggggtgtggccttgtcagagaaggt 560

                                                       
Query: 361 gtggccttgttggacgaagtgtgtgacttggaaaggctttatgg 404
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtggccttgttggacgaagtgtgtgacttggaaaggctttatgg 604


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)