BAC Information

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BAC

Clone NameMSMg01-338G02
Chromosome17 (Build37)
Map Location 67,732,767 - 67,733,013
singlet/doubletsinglet
Overlap genenone
Upstream gene1110012J17Rik, LOC100043876, Rab12, 9130404H23Rik, Ptprm
Downstream geneLrrc30, Lama1, Arhgap28, D930040M24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338G02.T7 (MSMg01no338_g02.b1)MSMg01-338G02.TJ (MSMg01no338_g02.g1)
ACCAG452924AG452925
length734767
length of high quality
(start - end)
247 (66 - 312)187 (70 - 256)
definitionCHROMAT_FILE: MSMg01no338_g02.b1 PHD_FILE: MSMg01no338_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:00 2005CHROMAT_FILE: MSMg01no338_g02.g1 PHD_FILE: MSMg01no338_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAAT
TCTCTTATTTCCAAATAATGGAAATGGTTTAAGCTTTCATTACAAAGAAC
TTCCAGACAGCATAACGTTTGACAGTAAAAGATTAATGCCGTCTAAATAT
CCAAAAGAGAATGGTTAAATAAATTATACTTCATTCACACAATAAAATGA
GATTTGGGGTTCTGACTTGATAGGGGCCTATGTCCCCCAGCGAATGCTGG
GAGTGGGAACCACAGGTCTCAGAGCATCTCCGTGGCCAGTGTACTGGCTG
AGAGTTTGTGTCTTTTTTTATACAAGCTGGAGTTATCACAGAGAAAGGAG
CGTCATGTGAGGAAATGCTTCCATGAGATCCAACTGTAAAGCATTTTTTT
TCAATTAGTAATCAAGGGTGGGAAGTCCCGTTGTGGGTGGTGCTGTCTCT
GGGCTGGTGTCATGGGTTCTATAAGAAAGTAAGCTGAGCAAGCCAAGGGA
GAAAGCCAGTAAGTAATATCCCTCCGTGGCCTCTCATCAGCTCCTGCTTC
CTGACCTGTATGAGTTCCTGTCCCAACTTCCTTTGGTGATGAACAGCAAT
GTGGAAGTGTAAGCTGAACAAACCCTTTTCCTCCCCAACTTGCTTCTTGC
TCATGATGTTTGTGCAGGATTAGAAACCCTGACTAACACAGCCCGTGAAT
GGGCAATCCAGGACAAACTCCCAGTGTTCCAGCN
TTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATAACAGTAGCAAAATTAGTTATGAAGTTAT
GAATTACAGGAGTAATTTTATGTTTGGAGGTCACCCCCATAACATGAAGA
ACTGTATAAAAGGGTCACAGTGTTATGAGGGTTGAGAACCACTGGTCTAG
ACTTTTAACCTACATTTCCTGTCCCAGTTGGCAAGAAATTAAAGCTTCCT
CTGGGGGAGGGTGTGGGACAGATAGTGCAGGAAGAAGAGGCACATGGTCT
CATTATGTGCCTAGTTATTTTAGTAGGGTCCTTAGCACATGAAACAGGAA
CCCTCCTAGTCCTGACATCTCTGACAGTAGGCTGTCCTAGATCCTGCTCC
AGAACCTTTGCCGACGGCCCTAGTGTAGCATTGTCATATACAGTTTGCAC
CTGTCTCCAGGGGTTCCCTCCAAGGTCTACCAGGGCACCCTTGCAAGAAC
TCCTTTCAATTAAGAGCCCTGTCTGGTTTGGTTCAGCTCCATATCTGTGG
CTTGAGTGGTACTTGCACCCCTTTCTGTTTATCCCTACCCATCTCAATCT
CTCCCTCTTCCATTGATTGTCCTGTTTTTTGTTATTATGTTTACCCCCAC
CAATTCCTTTTTTGGTGTTGTTTTCTGCCTTCCTGTACGGTTCCCTAGAC
TCTAGCATATCCTCGCCTTATCCAACAAGTTTAGTCTTAACGGTTTAGTC
CTACTCTTTCTCTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_g02.b1 MSMg01no338_g02.b1 CHROMAT_FILE:
MSMg01no338_g02.b1 PHD_FILE: MSMg01no338_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:00 2005
         (247 letters)



>mm_chr17_67732434_67733080
          Length = 647

 Score =  462 bits (239), Expect = e-135
 Identities = 245/247 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taatggaaatggtttaagctttcattacaaagaacttccagacagcataacgtttgacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 taatggaaatggtttaagctttcattacaaagaacttccagacagcataacgtttgacag 521

                                                                       
Query: 61  taaaagattaatgccgtctaaatatccaaaagagaatggttaaataaattatacttcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 taaaagattaatgccgtctaaatatccaaaagagaatggttaaataaattatacttcatt 461

                                                                       
Query: 121 cacacaataaaatgagatttggggttctgacttgataggggcctatgtcccccagcgaat 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 cacacaatgaaatgagatttggggttctgacttgataggggcctatgtcccccagcgaat 401

                                                                       
Query: 181 gctgggagtgggaaccacaggtctcagagcatctccgtggccagtgtactggctgagagt 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 400 gctgggagtgggaaccacaggtctcagagtatctccgtggccagtgtactggctgagagt 341

                  
Query: 241 ttgtgtc 247
           |||||||
Sbjct: 340 ttgtgtc 334


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)