Query= MSMg01no338_j10.b1 MSMg01no338_j10.b1 CHROMAT_FILE:
MSMg01no338_j10.b1 PHD_FILE: MSMg01no338_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:15 2005
(624 letters)
>mm_chr17_93931436_93932459
Length = 1024
Score = 835 bits (432), Expect = 0.0
Identities = 453/460 (98%)
Strand = Plus / Minus
Query: 163 ctttattagaatactgaatcatttcagtatttttctggagattattgagttttctttaga 222
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 1024 ctttattagaatactgaatcatttcagtatttttctggagatttttgagtttcctttaga 965
Query: 223 aaggtattttgaaccttagagtttgcatacattccttactgtatggtcatttaatggcat 282
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 964 aaggtgttttgaaccttagagtttgcatacattccttactgtatggttatttaatggcat 905
Query: 283 cttactttggctgtaaggtgaagtcatggttctctggcagttcttgatgcttttgactca 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 cttactttggctgtaaggtgaagtcatggttctctggcagttcttgatgcttttgactca 845
Query: 343 caagcatctgcacaatgaaggatttgatgtgtttatccatggtttatacatattatgact 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 caagcatctgcacaatgaaggatttgatgtgtttatccatggtttatacatattatgact 785
Query: 403 atattatacctattactgtagaattgtaagcttttattattttctctaaacctgtagact 462
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 atattatacctattgttgtagaattgtaagcttttattattttctctaaacctgtagact 725
Query: 463 gtttctcaatttcatcatgacatggcacagtaaatctatgcatgtccaaatccatcctga 522
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 724 gtttctcaatttcatcatgacatggcacagtaaatctatgcatgtccaaatctatcctga 665
Query: 523 gtgtcttgtcattttctcagcactagagggtgatcaaatgccaggctagattgcaaacct 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gtgtcttgtcattttctcagcactagagggtgatcaaatgccaggctagattgcaaacct 605
Query: 583 aaagttgttttgttcaacattaactaaggtaactgtctaa 622
||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aaagttgttttgttcaacattaactaaggtaactgtctaa 565
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_j10.g1 MSMg01no338_j10.g1 CHROMAT_FILE:
MSMg01no338_j10.g1 PHD_FILE: MSMg01no338_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:15 2005
(618 letters)
>mm_chr17_93734881_93735898
Length = 1018
Score = 1166 bits (603), Expect = 0.0
Identities = 615/619 (99%), Gaps = 2/619 (0%)
Strand = Plus / Plus
Query: 1 ttagctctttatttccaaagagatgattttgtttagtggggtttgctcaatatatatttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagctctttatttccaaagagatgattttgtttagtggggtttgctcaatatatatttc 260
Query: 61 tctcgcaatgctggcactggctgtaaacccaatctattatttcatcaaaattgttagcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcgcaatgctggcactggctgtaaacccaatctattatttcatcaaaattgttagcat 320
Query: 121 cagagcacagtacttttttcag-aataatttttgacttaacattaaatacaaaacaaaat 179
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagagcacagtacttttt-caggaataatttttgacttaacattaaatacaaaacaaaat 379
Query: 180 caatagttcaggtggtatatacaggaacttgttggcaagcagattcaattctggaaccca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caatagttcaggtggtatatacaggaacttgttggcaagcagattcaattctggaaccca 439
Query: 240 catagtggaacaagagaactgctcccacatgggtatatctgttctttcaatagatgtgta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 catagtggaacaagagaactgctcccacatgggtatatctgttctttcaatagatgtgta 499
Query: 300 ctttaaagaatttacacttgaagaaaattgaatctggcaggtctcccaggagatctgttg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctttaaagaatttacacttgaagaaaattgaatctggcaggtctcccaggagatctgttg 559
Query: 360 taactaggaacatgggtgagaccccctcctcaaataatcatccagctggaacccacacag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taactaggaacatgggtgagaccccctcctcaaataatcatccagctggaacccacacag 619
Query: 420 agcacagtggatgcaggacctctcccctctgtgcgactccatctccctttctgtctgcac 479
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 620 agcacagtggatgcaggacctctcccctctgtgcgactccatctcccttcctgtctgcac 679
Query: 480 ctccaaggggggtgttgttgttggggcagatccatgtgcctactctttctccacttccca 539
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctccaagcggggtgttgttgttggggcagatccatgtgcctactctttctccacttccca 739
Query: 540 tagcctgtccttctcccagaagatctgccataatcagggacacaggaggccccctctaac 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tagcctgtccttctcccagaagatctgccataatcagggacacaggaggccccctctaac 799
Query: 600 cagagaacgcactgcctgt 618
|||||||||||||||||||
Sbjct: 800 cagagaacgcactgcctgt 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
