BAC Information

Click to search

BAC

Clone NameMSMg01-338L09
Chromosome17 (Build37)
Map Location 37,852,017 - 37,852,702
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp
Downstream geneOlfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131, Olfr132, Olfr133, Olfr134, Olfr135, Olfr138, Olfr137, Olfr762-ps1, Olfr136, LOC626985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338L09.T7 (MSMg01no338_l09.b1)MSMg01-338L09.TJ (MSMg01no338_l09.g1)
ACCAG453174AG453175
length739779
length of high quality
(start - end)		690 (43 - 732)55 (66 - 120)
definitionCHROMAT_FILE: MSMg01no338_l09.b1 PHD_FILE: MSMg01no338_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:24 2005CHROMAT_FILE: MSMg01no338_l09.g1 PHD_FILE: MSMg01no338_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:24 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTGACTGTGGCATACCGAATGGCTGAGAAGCACCTGANAAAATGTTCA
ACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCTTGAGATTCTA
CCTCATACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAT
GCTGGCGAGGATGTGGAGAAAGAGGAACACACCTCCATTGCTGGTGGGAT
GGCAAGCTAGTACAACAACTCTGGAAGTCAGTATGAATGCTCCTCAGAAA
ATTCAACACAATACTACCGGAAGATCCAGCAATATCTCTCCTGGGCATAT
ACTCATGGCTTCTTTCTTTCTCAGAAAATAGCTTAAGTCCATGGGAAATC
AACACAATGCAATGCTGAGACTAGAGACTGTCATTACATACTGCACCTTA
ATATAGTTAAGTGATCTAACAATTTCTATTGTGTGAGGCTAAAGTGTCAC
TCAGCTGGTGACACCTTGTCCTTTGGTGAGTGATTGTGAAACATGAGCCT
CCTCATAATCTTTTCTAACAATCTACATAAACCATGAGTACTATTAGAGA
ATTTTAGAAATAGTGACTACAAAGTGGTGATAATGAACATTTCCTGAGAA
GTTCTGCACAGAAACTGATGTGTTTCAGAATCAGAATTAATAGTGTATCA
TGGTTTCCATCTGCTCACAAAACATAAAAAAACATTTAG

GAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTGTAGAGATAGAACAAAGGCTGCATTACTTAATT
CCCTTCTGTTAGGCTACAGGAGTTAATCGCCTAAACCAGGGACTTTTAAC
CTTCCAATGACCAAGNAGGATTAGCNCTTTATAGAGTGTTCTCATATTAC
TAAATAAACTAGGGTGCTAAACACATCTCAAGATGATCGCCCCCTGNGCC
TCTGATACTTGGATAATATAAGGGGGCTATTTGGACAAACGAGCCGAGGT
GGCACCATTTGGGGCTGGGGGCTAATTGGGAAAAAAAAAATGGGAACCCC
CCCCCCCGGGGAAACTTAGGTTTTTTTAAAAAGCAAAGGAGGTTTTATTT
TTTTGGGAAAAAAAAGGAGGGCTTTTTTTAACCNGGGAAAATATATTTAT
TACTTTTGGGGNGNNGNGAAAAAACAAAGGGAGGGAAACTCCCCCTTTTT
TTTTTTTTTTTTTTTTTTCCCCCCCCAAATATTGGGCGGGGGGGGGGGGG
TGGGTCTTTTTTTTAACTTAAAATAAATAACCGAGCGCAGTGTGGGGGGA
GTCTTACCCTCTAGTACCCTCGTGGGCGGGGTGGGAAACAAAACATATAT
TTTTATTTTTTTTTTTTNNTCTCCCCCCCCCCTTATTCAATAATATTCAT
AAATCTATCGTTTACATTTTTTCTTTCTCGGCCTTCTCCCCCATCTTAAT
GCTGGTGTACTGGCCGTAGAACGGCGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_l09.b1 MSMg01no338_l09.b1 CHROMAT_FILE:
MSMg01no338_l09.b1 PHD_FILE: MSMg01no338_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:24 2005
         (690 letters)



>mm_chr17_37851813_37852902
          Length = 1090

 Score = 1266 bits (655), Expect = 0.0
 Identities = 678/686 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgactgtggcataccgaatggctgagaagcacctganaaaatgttcaacatcc 64
           ||||||||||||| || |||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 gaattcttgactgaggaatactgaatggctgagaagcacctgaaaaaatgttcaacatcc 264

                                                                       
Query: 65  ttaatcatcagggaaatgcaaatcaaaacaaccttgagattctacctcataccagtcaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttaatcatcagggaaatgcaaatcaaaacaaccttgagattctacctcataccagtcaga 324

                                                                       
Query: 125 atggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagagga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagagga 384

                                                                       
Query: 185 acacacctccattgctggtgggatggcaagctagtacaacaactctggaagtcagtatga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 385 acacacctccattgctggtgggatggcaagctagtacaacaactctggaagtcagtatgg 444

                                                                       
Query: 245 atgctcctcagaaaattcaacacaatactaccggaagatccagcaatatctctcctgggc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgctcctcagaaaattcaacacaatactaccggaagatccagcaatatctctcctgggc 504

                                                                       
Query: 305 atatactcatggcttctttctttctcagaaaatagcttaagtccatgggaaatcaacaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atatactcatggcttctttctttctcagaaaatagcttaagtccatgggaaatcaacaca 564

                                                                       
Query: 365 atgcaatgctgagactagagactgtcattacatactgcaccttaatatagttaagtgatc 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 565 atgcaatgctgagactagagactgtcattacatactgcaccttaatatagttaagtaatc 624

                                                                       
Query: 425 taacaatttctattgtgtgaggctaaagtgtcactcagctggtgacaccttgtcctttgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taacaatttctattgtgtgaggctaaagtgtcactcagctggtgacaccttgtcctttgg 684

                                                                       
Query: 485 tgagtgattgtgaaacatgagcctcctcataatcttttctaacaatctacataaaccatg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgagtgattgtgaaacatgagcctcctcataatcttttctaacaatctacataaaccatg 744

                                                                       
Query: 545 agtactattagagaattttagaaatagtgactacaaagtggtgataatgaacatttcctg 604
            ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgtactattatagaattttagaaatagtgactacaaagtggtgataatgaacatttcctg 804

                                                                       
Query: 605 agaagttctgcacagaaactgatgtgtttcagaatcagaattaatagtgtatcatggttt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 agaagttctgcacagaaactgatgtgtttcagaatcagaattaatagtgtatcatggttt 864

                                     
Query: 665 ccatctgctcacaaaacataaaaaaa 690
           ||||||||||||||||||||||||||
Sbjct: 865 ccatctgctcacaaaacataaaaaaa 890


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |