BAC Information

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BAC

Clone NameMSMg01-339F17
Chromosome17 (Build37)
Map Location 9,210,812 - 9,211,071
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040822, Rnaset2a, Fgfr1op, Ccr6, LOC667114, Brp44l, Sft2d1, LOC100038858, 9630019K15Rik, EG435502, LOC433063, T2, T, LOC100040817, Pde10a, 1700010I14Rik
Downstream geneEG667165, EG667170, LOC666143, 4932702K14Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339F17.T7 (MSMg01no339_f17.b1)MSMg01-339F17.TJ (MSMg01no339_f17.g1)
ACCAG453661AG453662
length733724
length of high quality
(start - end)
261 (336 - 596)76 (382 - 457)
definitionCHROMAT_FILE: MSMg01no339_f17.b1 PHD_FILE: MSMg01no339_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:10 2005CHROMAT_FILE: MSMg01no339_f17.g1 PHD_FILE: MSMg01no339_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTGATTTCCCTAACCTGACAAGATACTAGGAATGAAGACATTT
ATTCTCAGGTCTGCATGATATATGTAATTTACACATGACGTGGGAGTCAG
CTTAAATTAAAGAACCAGTGCTTTTCGAAAGGCAAGCCCCTGAGGCTGGA
GAGGAGGATCAGCAGTTAGGAGCAGTGGCTGCTCCTCCAAAGAAGCCTGG
TTTGGTTCCCAGCACCTACATGGTAGCTCACATCATTCATAACTTTAATA
CCTGGGAATCCAGTGCCTTCTTCTGGCCTCTGTAGGCACTGTATGCAAAT
GGTAAACAGGTGCAGGCAGAACATTCATACACATAAGAAAAAAAAATATA
AAAACTATTTTTAAAGGAAGCAAAGGCTTAAGAGAGCATCTACCAAAAAA
TATTTCCCGGCATTTGCAAGCAGCTCAATTGCACCTAAGATATTCTACTT
TCTGCAACTGAGCTAAATGCAGAGAACAACTGAGCACTGCAGGCCCAGAC
CCAGTTAGCACATCTATAGCACCACTCTTGCACTGAAGACTTGGGACCAT
CAGAGAAGAGAGAGCACAAAGACTGTGAAGGCCAGAGGACCAGGAGGTCT
ATGGCAAGATCTACTGTAAGAGCTTCAGGCGATAACAGGGTTGAGCGATT
AGTCTTCCCTCCAGAGGAACTCCCTAAAGGGCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXACCCGAGCAGGCTCTGTGCAAAGCATTTTGTTTATGTCGCCATG
CTCATTAACAGTGTTAATCATTGATTCTTGCCCACCTCATGTGACTTTGA
GCACTGTGCCTATGCTCTGCATTCCCTTATCTGACTCCTTGGCCATTATG
CATGAAGCTCTTGTGAGCACCTGCCGTGTTCCCAGCTCTCTACTAGATCC
CAGGATCAGTGCAGGAGCAGGGAGTAGCTTCCTTGGCATAGCGACCAGCG
AGAGAAACTAACCAAGCCCAGTGTTGGCGTGATAAAGTGACGATGCCTGA
GAGACCACTGGGATGATTTAGTTGGAACCTGTTTCTTTCAGCTACAGTCT
TAGATAGGTGTCTCTTCCTCACTTTCTGAACTATTTGACCTTCATGTCTC
ATTCTTAAGATGATAGGAAATTCACAGGTTTCTATCGCTTGTGTATGGAT
AGCTACCACCCTGTAGTAGCATTAGCGATGATTAAGAATTTGAACCCCTG
GCCTTCCACAACCTATAAAATATGTTTGCTGTTCTAGGAGCATGCTCTGA
AGAGACCCCTCAAGGGATGAGGGGTGGCATTTGTCCAAAGAAGAGGGAAC
CGGATTCTGAATTTATAGGAGCCATAAATCTTCTTGTTAAGGAATAAGCT
GGAGAGTTTGAAAATTCCGGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_f17.b1 MSMg01no339_f17.b1 CHROMAT_FILE:
MSMg01no339_f17.b1 PHD_FILE: MSMg01no339_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:10 2005
         (261 letters)



>mm_chr17_9210532_9211192
          Length = 661

 Score =  466 bits (241), Expect = e-136
 Identities = 256/261 (98%), Gaps = 1/261 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcactgtatgcaaatggtaaacaggtgcaggcagaacattcatacacataagaaaaaaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 540 gcactgtatgcaaatggtaaacaggtgcaggcagaacattcatacacataag-aaaaaaa 482

                                                                       
Query: 61  atataaaaactatttttaaaggaagcaaaggcttaagagagcatctaccaaaaaatattt 120
           |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 481 atataaaaactatttttaaaggaagcaaaggcttaacagagcatctacaaaaaaatattt 422

                                                                       
Query: 121 cccggcatttgcaagcagctcaattgcacctaagatattctactttctgcaactgagcta 180
           |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cccggcattttcaagcagttcaattgcacctaagatattctactttctgcaactgagcta 362

                                                                       
Query: 181 aatgcagagaacaactgagcactgcaggcccagacccagttagcacatctatagcaccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aatgcagagaacaactgagcactgcaggcccagacccagttagcacatctatagcaccac 302

                                
Query: 241 tcttgcactgaagacttggga 261
           |||||||||||||||||||||
Sbjct: 301 tcttgcactgaagacttggga 281


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 661
Length adjustment: 9
Effective length of query: 252
Effective length of database: 652
Effective search space:   164304
Effective search space used:   164304
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)