BAC Information

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BAC

Clone NameMSMg01-339I12
Chromosome17 (Build37)
Map Location 69,576,657 - 69,577,148
singlet/doubletsinglet
Overlap geneEpb4.1l3
Upstream geneD930040M24Rik, EG622645
Downstream gene2410021H03Rik, Zfp161, C030034I22Rik, A930029G22Rik, A330050F15Rik, LOC100043623, LOC668720, LOC673535, LOC100043630
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339I12.T7 (MSMg01no339_i12.b1)MSMg01-339I12.TJ (MSMg01no339_i12.g1)
ACCAG453794AG453795
length771798
length of high quality
(start - end)		496 (49 - 544)515 (134 - 648)
definitionCHROMAT_FILE: MSMg01no339_i12.b1 PHD_FILE: MSMg01no339_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:23 2005CHROMAT_FILE: MSMg01no339_i12.g1 PHD_FILE: MSMg01no339_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTCCCATGATGCACGATGTCTTTGTTGGATGGGGGTGCAGCA
TTTCAGTGTCAGACAGCTGTGTCTCTCCCTGGTAGGTATATTTGAAATTC
CTCTTTAAGGGCAAAGGAAACCCTTTCTTGGAGCCACATCTATTGGTAAC
ATGGCCCCCGCTTTCCCCGGGGCCCCTCAGAGGAATGAGTGATGGTAAGC
AGATGTACACAGCCACACAAGAAACTGTTCTTGTCGTGACGTTTGGGAAA
CGGAAAGGCACACAGAGACTTGTTATTTCTTATGGAATGCCATGGCGACA
GCAAATACAGTCACCAAAGAGGCACCACATTCTTCAGGGAAATGCCATTA
GCCTGAGCTGGGAGAGCACATGAATAGTTTAAGATAATTACCCCCAAGCA
AAATGCCGTAATGTCTCCAGTCATCCCTTTATAGAAGATCTTGCCCAGAA
TGTCATGGTTTACAGAGCTTTCCTAAAGAGGGCAGGGGTAGGAATGTGTT
GTGATGGCAGTATGAGGCAAGCAGACCCCACCCCACAGCTTAGAGCTGTG
GTCAGTTTCCGAAACACAGTTTAACTTGTGCTTTGTCTTACTCCCCCAAG
AATTTGGGGCTTTTTCCTAATCTCCGACCTTATTTCCACAAGAATTAGAA
AAGTTTCCACTTTCCACATACGATACCATAAGCAACAAATTTGAACATTT
TTTTATTTCTCTATTATTATT

CACTAACCTTTTTTTTTTTCCCCTTTTTTTTCTCCGCATATTTTTTCCCC
CCTCCTCCCAAGAAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGCTAAATACATCTG
TCTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATG
AAAATGAAGCCACAACATACCCAAACTTATGGGACACAATGAAAGCATAT
CTAAGAGGAAAACTCATAGCTCTGAGTGCCTCTAAAAAAAAACTAGAGAA
AGCACACACTACCAGCTTGACAACAAATGTAAAAGCTCTAGAACAAAAGG
AAGCAAATTCACCCAAGAGGAGTACAAGGCAGGAAATAATCAAACTCAGG
TGCAAAACCAACCAAGTGAAAACAAGAAGAACTATTCAAAGAATCAACCA
AACGAGGAGCTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAG
CCAGACTCACTAGAGGGCACAGGGACAATATCCTAATTAACAAAATCAGA
AATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCAT
CAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGAAG
AAATGGACAAATTTCTAGACAGACACCAAAGTTAAATCAGGATCAGATTA
TTGACCTAAACAGTCCTATATCTCCTAAAGAAATAGAATCAGTCATTAAT
AGTCTCCCAACCTATAAAAAGCCATGGTCCAGATGATTTTAGTGCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_i12.b1 MSMg01no339_i12.b1 CHROMAT_FILE:
MSMg01no339_i12.b1 PHD_FILE: MSMg01no339_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:23 2005
         (496 letters)



>mm_chr17_69576453_69577348
          Length = 896

 Score =  928 bits (480), Expect = 0.0
 Identities = 489/492 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcccatgatgcacgatgtctttgttggatgggggtgcagcatttcagtgtcag 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcccaggatgcacgatgtctttgttggatgggggtgcagcatttcagtgtcag 264

                                                                       
Query: 65  acagctgtgtctctccctggtaggtatatttgaaattcctctttaagggcaaaggaaacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acagctgtgtctctccctggtaggtatatttgaaattcctctttaagggcaaaggaaacc 324

                                                                       
Query: 125 ctttcttggagccacatctattggtaacatggcccccgctttccccggggcccctcagag 184
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctttcttggagccacatctactggtaacatggcccccgctttccccggggcccctcagag 384

                                                                       
Query: 185 gaatgagtgatggtaagcagatgtacacagccacacaagaaactgttcttgtcgtgacgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaatgagtgatggtaagcagatgtacacagccacacaagaaactgttcttgtcgtgacgt 444

                                                                       
Query: 245 ttgggaaacggaaaggcacacagagacttgttatttcttatggaatgccatggcgacagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgggaaacggaaaggcacacagagacttgttatttcttatggaatgccatggcgacagc 504

                                                                       
Query: 305 aaatacagtcaccaaagaggcaccacattcttcagggaaatgccattagcctgagctggg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaatacagtcaccaaagaggcaccacattcttcagggaaatgccattagcctgagctggg 564

                                                                       
Query: 365 agagcacatgaatagtttaagataattacccccaagcaaaatgccgtaatgtctccagtc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agagcacatgaatagtttaagataattacccccaagcaaaatgccgtaatgtctccagtc 624

                                                                       
Query: 425 atccctttatagaagatcttgcccagaatgtcatggtttacagagctttcctaaagaggg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atccctttatagaagatcttgcccagaatgtcatggtttacagagctttcctaaagaggg 684

                       
Query: 485 caggggtaggaa 496
           ||||| ||||||
Sbjct: 685 cagggataggaa 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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