Query= MSMg01no340_g14.b1 MSMg01no340_g14.b1 CHROMAT_FILE:
MSMg01no340_g14.b1 PHD_FILE: MSMg01no340_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:25 2005
(591 letters)
>mm_chr17_31944473_31945463
Length = 991
Score = 768 bits (397), Expect = 0.0
Identities = 511/602 (84%), Gaps = 84/602 (13%)
Strand = Plus / Plus
Query: 5 gaattcagaaatatgcctgcctctgcctcccaagtgctgggattaaaggcatgtgtcacc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gaattcagaaatatgcctgcctctgcctcccaagtgctgggattaaaggcatgtgtcacc 318
Query: 65 actgcctggcaaaaaaataaatctttaaaaaaaaagaaaaagaaagaaagaaagaaagaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 319 actgcctggcaaaaaaataaatctttaaaaaaaaagaaaaagaaagaaagaaagagagag 378
Query: 125 agaaagaaagaaagaaagaaagagagagagagagagagagagagagagagagagagagag 184
||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aga--ga--------------gagagagagagagagagagagagagagagagagagagag 422
Query: 185 agagagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa 244
||||||| |||||||
Sbjct: 423 agagaga----------------------------------------------gaaagaa 436
Query: 245 agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagcc 496
Query: 305 tcaagccttcctgggtgttggtagcacacaaggacactgagggtctgggaaacag----- 359
| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 497 t-------tcctgggtgttggtagcacacaaggacactgaaggtctgggaaacagaaatc 549
Query: 360 ----------gcagagtttcagcctggggtgggggaggggagtgtaacttgctacttcct 409
|||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 550 cccgaggtgggcagagtttcagcctggggtgggggaggggggtgtaacttgctacttcct 609
Query: 410 accctacaaacacatggatctacttagtgccttcaagtcctgaccctcaggagccatcaa 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 accctacaaacacatggatctacttagtgccttcaagtcctgaccctcaggagccatcaa 669
Query: 470 aagggagcgacttgcccagctatgccttgtgccccgggcccttccctgtcactcactgga 529
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 670 aagggagcgacttgcccagctatgcctagtgccccggggccttccctgtcactcactgga 729
Query: 530 gccaggagtcaactcctagcctttccattcccagcagaggncactcccaaggtccccagc 589
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 730 gccaggagtcaactcctagcctttccattcccagcagaggccactcccaaggtccccagc 789
Query: 590 aa 591
||
Sbjct: 790 aa 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 223
Number of extensions: 60
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_g14.g1 MSMg01no340_g14.g1 CHROMAT_FILE:
MSMg01no340_g14.g1 PHD_FILE: MSMg01no340_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:25 2005
(518 letters)
>mm_chr17_32080336_32081253
Length = 918
Score = 750 bits (388), Expect = 0.0
Identities = 391/392 (99%)
Strand = Plus / Minus
Query: 1 agcagcatgtccaccaccactctctgtttctaggacttcatcttcatctcagacactaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agcagcatgtccaccaccactctctgtttctaggacttcatcttcatctcagacactaag 333
Query: 61 gcccagtaaataacatccccttccccaagctctgtctcctaggttttggtgtgcctggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gcccagtaaataacatccccttccccaagctctgtctcctaggttttggtgtgcctggac 273
Query: 121 tgtttttgtgtccgtgaacttagctggaacgtttgcccacttggtctgggtatttcctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tgtttttgtgtccgtgaacttagctggaacgtttgcccacttggtctgggtatttcctct 213
Query: 181 gtgtaacgctggggtttgtgtgtgttgagtatgtgtcagagcttccttgttttaatggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gtgtaacgctggggtttgtgtgtgttgagtatgtgtcagagcttccttgttttaatggct 153
Query: 241 gtacagccatgttcacacgaccacagtgcatttctgcatttgttgtcgaacatttgggtt 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 gtacagccatgttcacatgaccacagtgcatttctgcatttgttgtcgaacatttgggtt 93
Query: 301 cattccaccttttagctactagtgaacaagcctgccaagaacacaagtgtgcaaaggtct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 cattccaccttttagctactagtgaacaagcctgccaagaacacaagtgtgcaaaggtct 33
Query: 361 gcttgagtccccacttttgattcttagcagtg 392
||||||||||||||||||||||||||||||||
Sbjct: 32 gcttgagtccccacttttgattcttagcagtg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
