BAC Information

Click to search

BAC

Clone NameMSMg01-340G23
Chromosome17 (Build37)
Map Location 14,552,403 - 14,552,837
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041352, LOC667372, LOC667384, Smok4a, Tcte2, Mllt4, LOC100041464, EG635895, EG664821, EG664831, 4930488N24Rik, Dact2, Smoc2, LOC664856
Downstream geneThbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340G23.T7 (MSMg01no340_g23.b1)MSMg01-340G23.TJ (MSMg01no340_g23.g1)
ACCAG454475AG454476
length1,447757
length of high quality
(start - end)
---426 (81 - 506)
definitionCHROMAT_FILE: MSMg01no340_g23.b1 PHD_FILE: MSMg01no340_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:27 2005CHROMAT_FILE: MSMg01no340_g23.g1 PHD_FILE: MSMg01no340_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACGTCTNCTTATCACGTAATGGGATGACGTNNATGNTNNNACGGAACGNN
NTTTNNTNNNNATGACCAGGTCCGANATGAGCAGACAGGNNNNNNNACGN
NNNNNNNNNNNNNNNNCAGTTCAAGGTGGAAGNAGNNATTGNNNNNNNNN
GNNNNNNNTNGNGGNNNNNNNNNNNNNNNNNNTNTNNNGNNNTNNNNNNN
NTNTTGTGNNNGTGTTTTTGTTGTGTTGGGGNTGGTGGNTTTGTGTGTGT
GTGTGTGTGNGTGTGNTTATGGGTGTNTGTGTGTGTTTGTTATTTNTGTG
NGNTTGTTGTGTGTTTTTNNGTTGTGTGTGCTGTAGNTGTGTTGTTGTGA
TGTGTTTTTGATNTGTGTGTGTGATATATGTTAGTAGTATGATTTNGTTA
TTGTGTGAGGNATGATGTGNATATGGTTATTGTGTATNTATGATAGTTGT
TTGATGNTGGAGAGAATGTTANTAATAGTATNTGATGAGTTATCGTGTAT
AATTNTACTCACTGTTACATACTGCTTTCGCACCAACGTGTATGTAGATG
TATCAGCTATAGTATCTGTCTATACAATCGGAATATTGCTGTATTATATG
ATGTCTCGTTTACCTCATTTTGCGTCCGTCTTGGATCTAGTATGATATTG
TCAGATGTAGATCGACTTTACTGGTCTTTTTATCTGNGCATGTTAAGAGA
ATATGATGTTCGGTGATATGAAGAGTGCTGCTATGCTACTGAGAGACATT
AATATAGATACTGCGCNTAGACGATTCGTGGAGTCTTATGGTAGCGTCAT
CATATATATATGTGAATCTATATGATACTACTTAGACTTCTTGTATAGTG
ATTATCGGCCATCAGTTTATGAGACTACTATCGTCCATCACGTGTGATGA
TATAGCTTCTGTATGTGTACTCTGTATCTATACGAGTCATCTGATTATTT
ATATAGTCTATATTATCTATTGATCTATTTATGTCTTATCTATTAGATGT
ACAGATGTTCTATGTGCTCGATTATGTGTATATTCTATCTTCTGTGTTTC
TATAATTATTATTGCATGCTTGNGATTATCATCACTGTTCTATTGTGGCG
TATAGTTATCTACTAACTTGTCTACTATTACTAACTATCTATGCATACTG
CTGAGTGTCTTATTCTATTCTGATATCTACATGATCTATGCTTGTTGTGC
TATTCTGTATGATTATGCTTGTATTATGGTACTATTTTATTCTCAACCGT
ATTGTCCTGATAATTGCTTACTTATGACACTATCCATAGTGCCTATGTGA
CTAACATCGACTCTNATATATGCGTTTGTGTACTGCATTGTGTCTGATAA
CATGTGTTATATATCCATATGCATGAGTGCNATCGCATTACGTATGCATG
TATTCCTATTATACGATAAAGATTCACTTACTGTACGTGTTCTCTCT
NNNNNCCCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCTAGGAGCCCTTGGCA
GCATCTCCTGCAGAAATGGGGTAGCTGTGACATATACATGTACATAACAC
ACTAATGTATATAATGTAGGCATATGCACATATAGTTACATAATGAGGAT
CCAGGTTTATTTATATGTAGGTGCAACATATATACACACTTAGGTGTACA
TAGCACTTGGTCTATGTATGTGTGCATAATCTGCATGTCCATGCTTGTGT
GTGTGTTATAAGTGACACATACGCTGTATTGGTGGTTTCTATGGAGATGG
CTAACACAGGAAGACCGTGCAGATGAGAACCCCATGGTGGGCACAGCTGC
TATAAGTCTCCTCTGATTTCATTTGTGTTCCTCAGAGCCTGAGACATGGC
TGATGCCTGTAGCTGATAGGCAGATGATCCCAGAAACCACATGGCCATGT
GGCCAGTGATGAAAGGGAAGATGGCTGAAGAAGATGGCGCTGATTCTGAG
ATTAAACTTAAAACTCCTAAGAACTGCCCAGGTGCCTTTGGGCANTCCTG
CATGGCCTTGGGCAGCATCTGGGATCACAAGGGCTAATTCTTTGTCAGGG
GGAGAACCCTCTTTCCTTGTAAAAAAGAAAGAAGGGTGCGTAAAGGGGGA
AAATTAAATCCCCTGGGAACCTGGGAAAAGAAAAAAGGAAAAAACCAAGT
GCAAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_g23.g1 MSMg01no340_g23.g1 CHROMAT_FILE:
MSMg01no340_g23.g1 PHD_FILE: MSMg01no340_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:27 2005
         (426 letters)



>mm_chr17_14552031_14552856
          Length = 826

 Score =  733 bits (379), Expect = 0.0
 Identities = 417/435 (95%), Gaps = 9/435 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgctaggagcccttggcagcatctcctgcagaaatggggtagctgtgacatatacatg 60
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 807 tttgctaggagcccttggcagcatctcctgcagaaatggggtagctatgacatacacatg 748

                                                                       
Query: 61  tacataacacactaatgtatataatgtagg---------catatgcacatatagttacat 111
           ||||||||||||||||||||||||||||||         |||||||||||||| ||||||
Sbjct: 747 tacataacacactaatgtatataatgtaggcagcatgtacatatgcacatatatttacat 688

                                                                       
Query: 112 aatgaggatccaggtttatttatatgtaggtgcaacatatatacacacttaggtgtacat 171
           ||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||| |||
Sbjct: 687 aatgaagatccaggtttatttatatgtaggtgcaacatatatacatacttgggtgtgcat 628

                                                                       
Query: 172 agcacttggtctatgtatgtgtgcataatctgcatgtccatgcttgtgtgtgtgttataa 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 agcacttggtctatgtatgtgtgcataatctgcatgtccatgcttgtgtgtgtgttataa 568

                                                                       
Query: 232 gtgacacatacgctgtattggtggtttctatggagatggctaacacaggaagaccgtgca 291
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 567 gtgacacatacgctgtattggtggtttctatggagatggctaacacagaaagaccgtgca 508

                                                                       
Query: 292 gatgagaaccccatggtgggcacagctgctataagtctcctctgatttcatttgtgttcc 351
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 507 gatgagaaccccatggtgggcacaactgctataagtctcctctgatttcatttgtgttcc 448

                                                                       
Query: 352 tcagagcctgagacatggctgatgcctgtagctgataggcagatgatcccagaaaccaca 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tcagagcctgagacatggctgatgcctgtagctgataggcagatgatcccagaaaccaca 388

                          
Query: 412 tggccatgtggccag 426
           |||||||||||||||
Sbjct: 387 tggccatgtggccag 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)