BAC Information

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BAC

Clone NameMSMg01-340K22
Chromosome17 (Build37)
Map Location 42,960,082 - 42,960,455
singlet/doubletsinglet
Overlap geneCd2ap
Upstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797
Downstream geneTnfrsf21, LOC100043770, Gpr110, Gpr116, Mep1a, LOC100043332, Pla2g7, Tdrd6, Slc25a27, Cyp39a1, Dscr1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340K22.T7 (MSMg01no340_k22.b1)MSMg01-340K22.TJ (MSMg01no340_k22.g1)
ACCAG454661AG454662
length740771
length of high quality
(start - end)		373 (51 - 423)430 (79 - 508)
definitionCHROMAT_FILE: MSMg01no340_k22.b1 PHD_FILE: MSMg01no340_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:44 2005CHROMAT_FILE: MSMg01no340_k22.g1 PHD_FILE: MSMg01no340_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTCAGACTTCAGAAGGAAAGCTATGCCTGTCTACTTGCTA
CTCTATGTATTTTAAGTTTTTTTTTTTTTTAAACTTCGCTTTCACATTCC
GCTCGAGTCATTATCCCTTTAATGACACCCCTTCTCACTAGACCCTTCCA
TTCCAGCAGGCCCTTCAGTTTCATGTTCGTAGTAGTTAGGTTTTGTCTGG
AATCATCTGTATTTATTGCCATTGACTGGGGCTGGGGTTTATTTACTTGA
GCCTTGAGCAAGGGCAGAAAACAAACAGTGGCTCCAGCACAGAAAAAACG
ACACACCCTAAGGATCCATTCACTGCCTTTCTCTTCTCAGGGTTGGGGAG
GGGTGGGGGGGCGAGAAGTGGGGGNGNNNNNNNNNNNNNNNNNNNNNNNG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGAGAAGGTTATCTATTCAG
TAACATTCAAATTTACTTCTATTAGAGAGGGTGAAACTAATTAGGTATTA
CACCTCAGGGCTGGTCTGCAGAGTGTTTACTTGGGACAATAGCCAGTTTT
ACCCAGACAAGGGAATACACAATGGCCTAGCGAATAGGTGGGTTTACCAT
GAGAGAGTTAGGGAATCCTTCTGAGACAGATTTCTTCACTAGAACCCCTG
GTGGTGGGTTTAACAATAGCCTAGCATTACACCTGGCTCGCTTCTTAGAG
GTAAACAGCAGCACCTGGTCCCCGCCATCTTCTGATGTATACATTCCTTA
TGTTTTGTGTCACTGTAACTTGGTGGATATATCTCTCCTGGTTTCTTGTT
ATTCTTCTGTATAAAACGTTTTGATGCTCAACTTGACATTACATTCAGAT
TCTACACAACCTCTCGTGTTGATATCTGTCTGTCATTCATTTCACCGACT
CCTTGGTCACCTTTCACCAGAGACCCATTCTACGCAGACAGGGGACAAAA
AGGTCTGCGGGACTAGCTTGATAAGCAAAACCGGGGATCTCCCACACTGG
GAGCTACGGGGACACCGGGAATTTACTAAAGTTCTGGGTTCTGAAAATAA
ACCCCTCCCGGTTACTGGATTGGGGAGGACTTTTACCCTTGGACCGGCCC
CCCCGACCTTTAAAAAAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_k22.b1 MSMg01no340_k22.b1 CHROMAT_FILE:
MSMg01no340_k22.b1 PHD_FILE: MSMg01no340_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:44 2005
         (373 letters)



>mm_chr17_42959878_42960655
          Length = 778

 Score =  636 bits (329), Expect = 0.0
 Identities = 362/375 (96%), Gaps = 7/375 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcagacttcagaaggaaagctatgcctgtctacttgctactc--tatgtattt 62
           ||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 578 gaattcttcagacttaagaaggaaagctatgcctgtctacttgctactctttatgtattt 519

                                                                       
Query: 63  taag--ttttttttttttttaaacttcgctttcacattccgctcgagtcattatcccttt 120
           ||||  |||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 518 taagttttttttttttttttaaacttcgcttttacattctgctcgagtcattatcccttt 459

                                                                       
Query: 121 aatgacaccccttctcactagacccttccattccagcaggcccttcagtttcatgttcgt 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aatcacaccccttctcactagacccttccattccagcaggcccttcagtttcatgttcgt 399

                                                                       
Query: 181 agtagttaggttttgtctggaatcatctgtatttattgccattgactggggctggggttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 agtagttaggttttgtctggaatcatctgtatttattgccattgactggggctggggttt 339

                                                                       
Query: 241 atttacttgagccttgagcaagggcagaaaacaaacagtggctccagcacagaaaaaacg 300
           ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 338 atttacttgagccttgagcaagggcagaaaa-aagcagtggctccagcacagaaaaaacg 280

                                                                       
Query: 301 acacaccctaaggatccattcactgcctttctcttctcagggttggggaggggt--gggg 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 279 acacaccctaaggatccattcactgcctttctcttctcagggttggggaggggtgggggg 220

                          
Query: 359 gggcgagaagtgggg 373
           ||| |||||||||||
Sbjct: 219 gggtgagaagtgggg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 778
Length adjustment: 9
Effective length of query: 364
Effective length of database: 769
Effective search space:   279916
Effective search space used:   279916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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