Query= MSMg01no340_l06.b1 MSMg01no340_l06.b1 CHROMAT_FILE:
MSMg01no340_l06.b1 PHD_FILE: MSMg01no340_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:46 2005
(663 letters)
>mm_chr17_77301725_77302787
Length = 1063
Score = 1102 bits (570), Expect = 0.0
Identities = 604/620 (97%), Gaps = 8/620 (1%)
Strand = Plus / Minus
Query: 5 gaattctaaagaactattcaacttagaaaagaaaaccccaaagcatccatgttcctgcaa 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaattctaaagaactagtcaacttagaaaagaaaaccccaaagcatccatgttcctgcaa 561
Query: 65 gtgacttcagtaacctcattggtttcacaggacagatattaatgaatgatttctttgttc 124
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 560 gtgacttcagtaacctcattggtttcacaggacagatatcaatgaatgatttctttgttc 501
Query: 125 agcaatttgtaccctatatggtgtgagcagttgtttgctcttttcttactaaatagtgtc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agcaatttgtaccctatatggtgtgagcagttgtttgctcttttcttactaaatagtgtc 441
Query: 185 gctttacaaaatactttacaaaatacattaactattatacatatttactctctaaaaagt 244
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 440 gctttacaaaatactttacaaaatacattaactattatatatatttactctctaaaaagt 381
Query: 245 ttgttaaaggggcctttaa--------atgtatgtatgtatgtatgtatgtatgtatgta 296
||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 380 ttgttaaaggggcctttaaatgtatgtatgtatgtatgtatgtatgtatgtatgtatgta 321
Query: 297 tgtatgttttatgtatgtacatatttaaaatttatttttaacacaatatattaagattat 356
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 320 tgtatgttttatgtatgtatgtatttaaaatttatttttaacacaatatattcagattat 261
Query: 357 agtgtcacttcaaccaacttccattagatcttccctacttcctgacccactcaaatctac 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agtgtcacttcaaccaacttccattagatcttccctacttcctgacccactcaaatctac 201
Query: 417 atatcttcattttctgaccttaagatataaataggcatatatgaccaatacaaatagtaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 atatcttcattttctgaccttaagatataaataggcatatatgaccaatacaaatagtaa 141
Query: 477 taatgttctcagataaaataaaaccaaaccatatagtaaaaatagacacagaataaaact 536
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 taatgttctcaggtaaaagaaaaccaaaccatatagtaaaaatagacacagaataaaact 81
Query: 537 agccatgtaaataagctgaaaatacatttattgacacagacacacacattcacatacaag 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 agccatgtaaataagctgaaaatacatttattgacacagacacacacattcacatacaag 21
Query: 597 gtaatgaaataaaaatagca 616
||||||||||||||||||||
Sbjct: 20 gtaatgaaataaaaatagca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_l06.g1 MSMg01no340_l06.g1 CHROMAT_FILE:
MSMg01no340_l06.g1 PHD_FILE: MSMg01no340_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:46 2005
(629 letters)
>mm_chr17_77223711_77224741
Length = 1031
Score = 1123 bits (581), Expect = 0.0
Identities = 620/635 (97%), Gaps = 6/635 (0%)
Strand = Plus / Plus
Query: 1 tccacttggaagtcaaagccaggggaagaagttcatttcaccatttcactgtgtctttat 60
||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||
Sbjct: 197 tccacttggaagtcaaagccaggggaaaaagttcatttcaccatttcactatatctttat 256
Query: 61 cattaatacagttcctaatggtttatgctaattgttttctgacttgttatttaattgtta 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cattaatacagtttctaatggtttatgctaattgttttctgacttgttatttaattgtta 316
Query: 121 tattt----atgtattaacaattaattaataaatataacaattaaattgttatttgctat 176
||||| || |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 317 tatttattaatttattaacaattaattaataagtataacaattaaattgttatttgctat 376
Query: 177 ggtattgcaggcttgaagagccaggcataaatttcttcactgaaatattactttaggaat 236
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggtattgcaggcttgaaaagccaggcataaatttcttcactgaaatattactttaggaat 436
Query: 237 atcaatggatttgctgtgttaacatattcagccatgatgcaaacttgaatgttatattca 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 atcaatggatttgctgtgttaacatattcagccatgatgcaaacttgaatgttatattca 496
Query: 297 aactcaagtgtacatcctaaaatagataatagaaatgtgaaaaggaatccttctatggga 356
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 497 aactcaagtgtacatcctaaaatagataataaaaatgtgaaaaggaatccttctatggga 556
Query: 357 ttctttttgtcttagttatgaagaattatgaagcaaatgtctttactctggtaaattgaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttctttttgtcttagttatgaagaattatgaagcaaatgtctttactctggtaaattgaa 616
Query: 417 taataaatattgattttcacatttttataggctgaaattttgtaagcaggcttccataat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 taataaatattgattttcacatttttataggctgaaattttgtaagcaggcttccataat 676
Query: 477 tattgagcttagatgaggactttactagtttgcaggagaaaacagaa-tgttttcacaca 535
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 677 tattgagcttagatgaggactttactattttgcaggagaaaacagaaatgttttcacaca 736
Query: 536 gccaggaagtcttacattttcttacaagaatatcagtcccatttttt-cagaatacactt 594
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 737 gccaggaagtcttacattttcttacaagaatatcagtcccatttttttcagaatacactt 796
Query: 595 tcattacataatttcctttctaattctatcctcca 629
|||||||||||||||||||||||||||||||||||
Sbjct: 797 tcattacataatttcctttctaattctatcctcca 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1031
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1021
Effective search space: 631999
Effective search space used: 631999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
