Query= MSMg01no340_p21.b1 MSMg01no340_p21.b1 CHROMAT_FILE:
MSMg01no340_p21.b1 PHD_FILE: MSMg01no340_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:07 2005
(534 letters)
>mm_chr17_26973184_26974117
Length = 934
Score = 812 bits (420), Expect = 0.0
Identities = 488/530 (92%), Gaps = 33/530 (6%)
Strand = Plus / Plus
Query: 5 gaattctgctctagttttcgatgactccttttatctgtaccaggcagccacagccacagg 64
|||||||||| ||||||| |||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 238 gaattctgctttagttttagatgactctttttatcggtaccaggcagccacagccacagg 297
Query: 65 cggcttgagtttcctgagtagaaagaaataggcctgatcccaagtagctggtggcgctgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 298 cggcttgagtttcctgagtagaaagaaataggcctgatcccaagtagctggtggcgcagg 357
Query: 125 cctttaaacccaccagaggagaccagaaagaaatcccagcagtggatttctgagttccag 184
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 358 cctttaaacccaccagaggagaccagaaagaaatcccagcggtggatttctgagttccag 417
Query: 185 aacagccagggctacacagagaagcccatctccaaaagcaagcaagcaagcaagcaagca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aacagccagggctacacagagaagcccatctccaaaagcaagcaagcaagcaagcaagca 477
Query: 245 agcaaacaaaaagtgtcttttttttttttttttttggatccctgaaagagaggagttgca 304
| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 478 a----acaaaaagtgtctttttttttt--------ggatccctgaaagagaggagttgca 525
Query: 305 aaggagacatcacaaaaaaaaaaaaaacccttcaaggctctggatattaatacacacaca 364
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 526 aaggagacatcacaaaaaaaaa-----cccttcaaggctctggatattaatacacacaca 580
Query: 365 cacacacacacacacacacacacacacacacacccccagcccccctcgcccccgcactga 424
||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 581 cacacacacacacacacac----------------ccagcccccctcgcccccgcactga 624
Query: 425 ggggagggaggagagcaggggtgatttataatattaagtgagaaaaaaacccttattctg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggggagggaggagagcaggggtgatttataatattaagtgagaaaaaaacccttattctg 684
Query: 485 ttgttattggacaccaatataccacgaaagagacagaggcagccctgagc 534
|||||||||||||| ||||||| | |||||||||||||||||||||||||
Sbjct: 685 ttgttattggacacaaatatacgatgaaagagacagaggcagccctgagc 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_p21.g1 MSMg01no340_p21.g1 CHROMAT_FILE:
MSMg01no340_p21.g1 PHD_FILE: MSMg01no340_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:07 2005
(551 letters)
>mm_chr17_27171799_27172748
Length = 950
Score = 930 bits (481), Expect = 0.0
Identities = 515/539 (95%), Gaps = 21/539 (3%)
Strand = Plus / Minus
Query: 1 ctggtggagtcacaccggtgtactccactagagtcctgctgccctgccaagacccaagtc 60
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 518 ctggtggagtcacaccggtgtactccactggagtcctgctgccctgccaagacccaagtg 459
Query: 61 aagatgacgcagcaggaaggcctggctaaactctggttgtgaacccaggcctcttccctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aagatgacgcagcaggaaggcctggctaaactctggttgtgaacccaggcctcttccctt 399
Query: 121 ctgcgaaccacggaccatcagggcagagagaagtgacggaatggacagaagtggcctcgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ctgcgaaccacggaccatcagggcagagagaagtgacggaatggacagaagtggcctcgg 339
Query: 181 aactggtgtggacgatatgtggggtcacccccagagcctgtgtgcgtctgtatgtctgca 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aactggcgtggacgatatgtggggtcacccccagagcctgtgtgcgtctgtatgtctgca 279
Query: 241 agctttggtgcaaataaggcaaaaacagaagaagagccacattcttcaagggctcgccca 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 278 agctttggtgcaaataaggc-aaaacagaagaagagccacattcttcaagggctcgccca 220
Query: 301 gcctgacaaacctccctagctgtaattccagcgctgaggagggtagagacaggagggaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gcctgacaaacctccctagctgtaattccagcgctgaggagggtagagacaggagggaca 160
Query: 361 gaagcccaaggccagcctgggctacatattgaggctagcctgagctacaaacaaaaacaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 gaagcccaaggccagcctgggctacatattgaggctagcctgagctacaaacaaaaacaa 100
Query: 421 aacaaaacaggggcaatactgtttcgtgtgtgtgtgtatgtctgtgtgtgtgtctgtgtg 480
||||||||||||||||||||||||| |||||||||||||||
Sbjct: 99 aacaaaacaggggcaatactgtttc--------------------gtgtgtgtctgtgtg 60
Query: 481 ggacatacctggccgtccaccatgccagcctcctccagtgtgatgtctggctgggtcag 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 ggacatacctggccgtccaccatgccagcctcctccagtgtgatgtctggctgggtcag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 950
Length adjustment: 10
Effective length of query: 541
Effective length of database: 940
Effective search space: 508540
Effective search space used: 508540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
