BAC Information

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BAC

Clone NameMSMg01-341A09
Chromosome17 (Build37)
Map Location 17,490,332 - 17,490,848
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965
Downstream geneRiok2, Lix1, LOC383297, Lnpep, EG665140, LOC100041519, EG626942, 4930546H06Rik, Has1, Fpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341A09.T7 (MSMg01no341_a09.b1)MSMg01-341A09.TJ (MSMg01no341_a09.g1)
ACCAG454922AG454923
length732753
length of high quality
(start - end)
539 (64 - 602)429 (75 - 503)
definitionCHROMAT_FILE: MSMg01no341_a09.b1 PHD_FILE: MSMg01no341_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:09 2005CHROMAT_FILE: MSMg01no341_a09.g1 PHD_FILE: MSMg01no341_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATT
CTCTTATTACACTGAAACTGGCGAAGGGTAGTCTCTAAAACTCAAGCATG
CTAATTTAATTTGCCTCATTAGAGGTATGTATTTAACATACTAATTGAGT
GCTCACTAAGTGACAGTTGTACATTTTTATGTATTTTTATTAATAGGGTT
TTATTTACTATGCTGCTCAGGCTGGACTTAAATTTCTGCGCTCAGGCCCT
CCTCCTGCCTCAGCCTCCTGAGACATTGGCACTACCCTTTCTCAGCTTAA
GCTTTCTTTTTGACTATTGTTTCTCATGAATTACAAATTCTGATATAAGT
GAAAATAGGATCAATGATTATAGAAAAATTAACCAAAACCAATTAGGTAA
CTAACAAATTGACAACCTTAATTACACATTTACAGAATGATATCCATATG
GCCATTTCCTTCTTCTCTTTCGTTGTACCCCTAGATGACCCCTTCTCAGG
AGGCCACCTCTTATTGCTGATTTGCAAGGATGCTTGCACCTTCCTCACCC
CCAACTCACACTGGACTCCAAGTCTTCCCTGGTGCATCCATTCCCTTTGA
TAGCAGCTGTGATCTCATGATTCTGGGTTCTTACTTCATTCTTCCCCTTC
TAGATTTTTAAAAGAAATTTTGCCTAACGGCCTTATCATGCGGAATGGGT
CTAAGGACTTCAACGTGTTCCTATGATCCTCC
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAATGAAGTATTAATTTGCATTTCCA
TTTTGGCTAAGGATGGAGAACATTTCTCTACGTGTTTCTCAGCCATTTGA
AGTTGTCTGTTGGGAACTGAATTCTTTGTTGAAATGTGTTGTGTATTACA
ACTCTATCATGTAGAGATTGGTAAAAAACTATCCTCACATTCCATACTTT
GCCTCTTTCTTTTTCTAATTAACTTGGCTTTTGCCTTACAGAAACATCAC
TATTTCTTGAGTTCCAATTCTTTAATTGCTGATCTTAATGCCTTCGACAT
TAGTGTTTTTCAGAAGTCTCTGCTGTGACAGTGCTGCCGGGGATGTTCTG
CCCTTAGGGTTCACTCAGGGTCACTGTGTCTGGCTTTAAGTCTTTTTTTT
TTTTTTGGATGGACTCTTTTTTTTTTTAAGATTTTATTTATTTATTTATT
TTCAGACACTCCAGAAGAGGGCATCCGATCTCATTACAGATGGTTGTGAG
CCCGCATGTGGCTGCCGGTACTCGAACTTAGCCCTTTCGGAATATTACCG
GTGCCTTTTAATCCCTTGAGCCCTCTTGTCATCCCTTGGCTTTATTCCTT
CTATCTACCTTTTTCTGCTTTTTTTCGCCCTCCTTCCCCCCCCTTTTCCC
CTTCTTTTTTCCCTTTCTTTACTTTCCACCCTTTCTTTAATCACCTTTCC
CTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_a09.b1 MSMg01no341_a09.b1 CHROMAT_FILE:
MSMg01no341_a09.b1 PHD_FILE: MSMg01no341_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:09 2005
         (539 letters)



>mm_chr17_17489910_17490848
          Length = 939

 Score =  992 bits (513), Expect = 0.0
 Identities = 516/517 (99%)
 Strand = Plus / Minus

                                                                       
Query: 23  taaaactcaagcatgctaatttaatttgcctcattagaggtatgtatttaacatactaat 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 taaaactcaagcatgctaatttaatttgcctcattagaggtatgtatttaacatactaat 880

                                                                       
Query: 83  tgagtgctcactaagtgacagttgtacatttttatgtatttttattaatagggttttatt 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 tgagtgctcactaagtgacagttgtacatttttatgtatttttattaatagggttttatt 820

                                                                       
Query: 143 tactatgctgctcaggctggacttaaatttctgcgctcaggccctcctcctgcctcagcc 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 tactatgctgctcaggctggacttaaatttctgcgctcaggccctcctcctgcctcagcc 760

                                                                       
Query: 203 tcctgagacattggcactaccctttctcagcttaagctttctttttgactattgtttctc 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 tcctgagacattggcactaccctttctcagcttaagctttctttttgactattgtttctc 700

                                                                       
Query: 263 atgaattacaaattctgatataagtgaaaataggatcaatgattatagaaaaattaacca 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 atgaattacaaattctgatataagtgaaaataggatcaatgattatagaaaaattaacca 640

                                                                       
Query: 323 aaaccaattaggtaactaacaaattgacaaccttaattacacatttacagaatgatatcc 382
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 639 aaaccaattaggtaactaacaaattgacaatcttaattacacatttacagaatgatatcc 580

                                                                       
Query: 383 atatggccatttccttcttctctttcgttgtacccctagatgaccccttctcaggaggcc 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 atatggccatttccttcttctctttcgttgtacccctagatgaccccttctcaggaggcc 520

                                                                       
Query: 443 acctcttattgctgatttgcaaggatgcttgcaccttcctcacccccaactcacactgga 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 acctcttattgctgatttgcaaggatgcttgcaccttcctcacccccaactcacactgga 460

                                                
Query: 503 ctccaagtcttccctggtgcatccattccctttgata 539
           |||||||||||||||||||||||||||||||||||||
Sbjct: 459 ctccaagtcttccctggtgcatccattccctttgata 423


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)