BAC Information

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BAC

Clone NameMSMg01-341J14
Chromosome17 (Build37)
Map Location 45,372,643 - 45,373,065
singlet/doubletsinglet
Overlap genenone
Upstream geneClic5, Runx2, Supt3h, 4930564C03Rik, EG210562
Downstream geneEG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341J14.T7 (MSMg01no341_j14.b1)MSMg01-341J14.TJ (MSMg01no341_j14.g1)
ACCAG455355AG455356
length757770
length of high quality
(start - end)
436 (48 - 483)243 (77 - 319)
definitionCHROMAT_FILE: MSMg01no341_j14.b1 PHD_FILE: MSMg01no341_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:54 2005CHROMAT_FILE: MSMg01no341_j14.g1 PHD_FILE: MSMg01no341_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATAATTGCAGCAAAACTACAGTTAGGAAGTAACAATGAAATAA
TTTTATGGTTGGGGGTCACCACACATGAGGAACTATAATTACAAGGTCTC
AACATTCAGAAGGTTGAGAACCATTATATCAGTGGGAAAAATACACGTTA
AAACACAGATGTGACACACTAGGGAATCTAATGAGCAATAAGGATGGATA
CACAAAGCTCTTAGCAGACAACAGAATCTCCTCCTGCTACCTGTCAAGAA
ACAGGATTTATTGGGAGTTTATGATTTCTGGAAGGCCAAAGAACAAGCCT
ATACAGCTATACAGCTATACAGCTATACAGCCTTGGCTATGCAGCTGTTG
TACAGTTGTCCCCTCTAGAAGGAGGGATGCTGACAGAGCTGGCGATGCTC
ACAACAACCTTACAAGATTCTGAAGTTCCTCCATGCGGGTAACATAAGCA
GCCAGCAGTGGAGGGCAGAGAGCAGCTAGCTTTTCAGCGGTGTGGTCGCC
TGCAAGTTGCACAGGGGGACGCACAGCTTTTGAGTGTCCCTACCCCAACT
GGGGTGAGCTCTCTTGGTGACTCCGATATCTGAAAGTCTTTCCTCCCTCC
TGTAGATCAATTAATTTAACTTTGGCTTTCCCACTTTATAAATTGGCCGG
GTTAATATCCCCCTCATTTTTTCTTTCCCCCTCCCTTTTTTGGGGGTGCT
TTCGGGN
CAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAATCTCTGTAGACATTTTGCA
GTGGCATGTAAATAACACAGACTGCCAGGCTGCCTTGTGGGTTCTGGTTG
TTGTTGTTGTTTTTGACAGGGTCTTACTGTGTCACTATGCCTATCACTGG
AACTTACTGTGTAGATCAGGTTGGTCTCAAGCTCAGACATCTGCCTACCT
CTGCCTCCCCAGTGTGAATAAAGATGTGAGCCACCACACACAGCATGCTT
TCTAGATTCTTACTCATATTTCTTTACGGATGTGTCTGAGGCCAAGATGG
AATAGAGAAGTTAAAAGGTATTCTTCAGGACACTGCATGCCCACAATGAC
CTAATCTTCCTCTTCCATGTGATCGTTACTTTTTCTTTATAGAACTCACC
ATTTTCCCCATTTCTTTTTACTCATATACCTCCCTCTCCATTTCCCATTT
TATTTCTTCGTCCCCACACCCTTTTTTTTTTTTCTCCTTCCTCCTTTTCT
TACTCTCCTCCTTCATATTCTTTTATTCCCTTCCCACTTCACATTCTTTT
TTTTCTCCCTCATTTTTCTTTCCCCTTCCCTTTTTTCTTTTTTACCTACC
CCCTTATTTATTCTCTCATTTCCCACCCTATCCCCATTTTCTTTACCTTT
CACTTCCCATTTATATATTCTATCTATTTATCCCCTTTCCTCTCCCTCCT
CCTCTCTCTACCCCTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_j14.b1 MSMg01no341_j14.b1 CHROMAT_FILE:
MSMg01no341_j14.b1 PHD_FILE: MSMg01no341_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:54 2005
         (436 letters)



>mm_chr17_45372438_45373273
          Length = 836

 Score =  714 bits (369), Expect = 0.0
 Identities = 412/431 (95%), Gaps = 8/431 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattcataattgcagcaaaactacagttaggaagtaacaatgaaataattttatggttgg 65
           |||||||||  | ||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 206 aattcataacagtagcaaaactacagttaggaagtagcaacgaaataattttatggttgg 265

                                                                       
Query: 66  gggtcaccacacatgaggaactataattacaaggtctcaacattcagaaggttgagaacc 125
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 266 gggtcaccacacatgaggaactataattaaaaggtctcaacattcagaaggttgagaacc 325

                                                                       
Query: 126 attatatcagtgggaaaaatacacgttaaaacacagatgtgacacactagggaatctaat 185
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 attctatcagtgggaaaaatacacgttaaaacacagatgtgacacactagggaatctaat 385

                                                                       
Query: 186 gagcaataaggatggatacacaaagctcttagcagacaacagaatctcctcctgctacct 245
           ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 386 gagcagtaaggatggatacacaaagctcttatcagacaacagaatctcctcctgctacct 445

                                                                       
Query: 246 gtcaagaaacaggatttattgggagtttatgatttctggaaggccaaagaacaagcctat 305
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gacaagaaacaggatttattgggagtttatgatttctggaaggccaaagaacaagcctat 505

                                                                       
Query: 306 acagctatacagctatacagctatacagccttggctatgcagctgttgtacagttgtccc 365
           |||||||||||||||||||||        |||||||||||||||||||||||||||| ||
Sbjct: 506 acagctatacagctatacagc--------cttggctatgcagctgttgtacagttgttcc 557

                                                                       
Query: 366 ctctagaaggagggatgctgacagagctggcgatgctcacaacaaccttacaagattctg 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ctctagaaggagggatgctgacagagctggcgatgctcacaacaaccttacaagattctg 617

                      
Query: 426 aagttcctcca 436
           |||||||||||
Sbjct: 618 aagttcctcca 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)