BAC Information

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BAC

Clone NameMSMg01-341O24
Chromosome17 (Build37)
Map Location 59,484,204 - 59,628,983
singlet/doubletdoublet
Overlap geneLOC100043537
Upstream geneCntnap5c, LOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik
Downstream geneLOC100043542, LOC100043549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341O24.T7 (MSMg01no341_o24.b1)MSMg01-341O24.TJ (MSMg01no341_o24.g1)
ACCAG455610AG455611
length814865
length of high quality
(start - end)		243 (43 - 285)250 (74 - 323)
definitionCHROMAT_FILE: MSMg01no341_o24.b1 PHD_FILE: MSMg01no341_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:19 2005CHROMAT_FILE: MSMg01no341_o24.g1 PHD_FILE: MSMg01no341_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,484,204 - 59,484,442)(59,628,735 - 59,628,983)
sequence
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGCCATGACCTCATGACCTCATATGAGCAAGTCAGTCACTCTAACACT
GAAGTGGGTAGACAGGCCCACTACAGCTTTATATGGTCTAGGAAACTGTC
TACTATGCTTTGATTTTATTTCACTAAATAAGTAACTTGCGTATATTTAT
TTTCATTTTGATTTTGTTTGAGGAAGAATGAAATTGAATCGGGCGAAGCA
TCTAGATGGAGGTGGGGGGAAGAGAATAAATATGNTCNAAATAAATTACA
TGATTCTTTTTTTAATTTTGATTTTTTTTACCTTAAAAATGGACATAATT
ATATGCGCTGAATATTGACTCCTTATTCGCTTCCTCTCCTTGCATAATAG
CCTCTCCTTCATTATCCGCCCCCCTCTTTATTTCCCCTTTATTTTTCCCC
CCTTTTCCCTTTCCCCCTTTTTCGCCTTCCCTTTATTTTTGCCTTTTTCC
CTCGGCCCTCCTTCCTTCTCATTCTCCTACCCCTCTTCCCCCGCCTCCTT
CTCCTCTTTCTCCCTTTTCCCCCTCCTTTCCTTCCATTTTTCTTCCCCCC
CCTTTTTCGCTTATTCCCCCTCCCTTCTTTTTCTTATACCTCTTCACCTC
CTTCTTTCCCCTTTTTTTTTTCCCCCTCCTCTTTACCCCATCTTTCTCTC
CTTTCCTCCCATTCCCCTTTCTACCCCACCCCTTTCCTTTTCTTCCTTCT
CCCCTTTTTCCCCGCTATTTCCCTCCCCCTCACCCTTTCCTTCCCTATTC
CCCCCTTTCCCCCT

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTGCAACAGGGATTTACTAACTCAGT
CAGACAATATGGAATAAAATTTGTTAAAAAATACTTGCAAAAGTGTTACT
CATATGTATACTATTACAGGGCTGACCACATGGTATTAGACACAGGTTTC
ATTATATGGAATGAGCAGATTATATTTCTGTATTAATAATATGTGTGTGT
GTAAAAACTAAAATAAAAAGAGGGCATACATTTGAAAGAGCAGGGGCAAT
GTACATGGAGGTAATAGGAACATAGATTAAGGATGATGTAAATATATATG
TGTGCATGCATATACATTACCCGTTCCCCCAACCCGTTTTGTTATCTTCC
ACCCTCCTTCTACAAGTCTACTCCTTCCTCATCTCCCTATCTCTTTCCCT
ATTTCTTCACTTTATTTCCCCCACCCATTTTTTTTTTCTTCCTTTTTGTC
TTTTATTCCCCGACATATTCCTCTTCTATCCCTTTCTCCCCTCTTTCCAT
TTCTCTCCCTTACTCATCCTCCTTACCACCCCCTCCTACCCCCCTCCCCT
CCCCCCCCTTTTTCCTTATACTCTTCCTCATTCTATATATCTCCATTTCC
CTCCCTTTCTCCTTTTCCTTCCCTCCCTCTTTTCTCCTCTTTCCTCTCTC
TGTCCCCCCTTTATTCTATTACATATCCCTCCCTCTTCTCTCCCATCTTA
TCTCTCTCTTCTCCTTACCCTTTTTTCCATCACTCCCTATCCTTTACCAC
CTTCTTCCCTATCTCCCTCCTCTCCTTCTTCTTTTCTTCTATCCCCCCCC
TCTTTTCTCTCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_o24.b1 MSMg01no341_o24.b1 CHROMAT_FILE:
MSMg01no341_o24.b1 PHD_FILE: MSMg01no341_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:19 2005
         (243 letters)



>mm_chr17_59484001_59484643
          Length = 643

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagccatgacctcatgacctcatatgagcaagtcagtcactctaacactgaagt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagccatgacctcatgacctcatatgagcaagtcagtcactctaacactgaagt 263

                                                                       
Query: 64  gggtagacaggcccactacagctttatatggtctaggaaactgtctactatgctttgatt 123
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gggtaggcaggcccactacagctttatatggtctaggaaactgtctactatgctttgatt 323

                                                                       
Query: 124 ttatttcactaaataagtaacttgcgtatatttattttcattttgattttgtttgaggaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttatttcactaaataagtaacttgcgtatatttattttcattttgattttgtttgaggaa 383

                                                                      
Query: 184 gaatgaaattgaatcgggcgaagcatctagatggaggtggggggaagagaataaatatg 242
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaatgaaattgaatcgggcgaagcatctagatggaggtggggggaagagaataaatatg 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no341_o24.g1 MSMg01no341_o24.g1 CHROMAT_FILE:
MSMg01no341_o24.g1 PHD_FILE: MSMg01no341_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:19 2005
         (250 letters)



>mm_chr17_59628416_59629065
          Length = 650

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgcaacagggatttactaactcagtcagacaatatggaataaaatttgttaaaaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tgtgcaacagggatttactaactcagtcagacaatatggaataaaatttgttaaaaaata 509

                                                                       
Query: 61  cttgcaaaagtgttactcatatgtatactattacagggctgaccacatggtattagacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cttgcaaaagtgttactcatatgtatactattacagggctgaccacatggtattagacac 449

                                                                       
Query: 121 aggtttcattatatggaatgagcagattatatttctgtattaataatatgtgtgtgtgta 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 448 aggtttcattatatggaatgagcagattatatttctgtagtaataatatgtgtgtgtgta 389

                                                                       
Query: 181 aaaactaaaataaaaagagggcatacatttgaaagagcaggggcaatgtacatggaggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aaaactaaaataaaaagagggcatacatttgaaagagcaggggcaatgtacatggaggta 329

                    
Query: 241 ataggaaca 249
           |||| ||||
Sbjct: 328 atagaaaca 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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