BAC Information

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BAC

Clone NameMSMg01-342J08
Chromosome17 (Build37)
Map Location 57,880,328 - 57,880,811
singlet/doubletsinglet
Overlap genenone
Upstream geneNrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916
Downstream geneCntnap5c, LOC674419, LOC620408, EG545216
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342J08.T7 (MSMg01no342_j08.b1)MSMg01-342J08.TJ (MSMg01no342_j08.g1)
ACCAG456101AG456102
length742718
length of high quality
(start - end)		279 (62 - 340)484 (67 - 550)
definitionCHROMAT_FILE: MSMg01no342_j08.b1 PHD_FILE: MSMg01no342_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:08 2005CHROMAT_FILE: MSMg01no342_j08.g1 PHD_FILE: MSMg01no342_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGA
TTACTCTTGAAGTAGTTGGGGTGGGGATCTGAGTTACAGTCTTTTTCTGG
CTTTTTTTAGCCACTGCTTTTCACCTCGAAGGGTGTATCCCAAATAAGTC
ACTTCAGTCTGACACAGCTGAGCCTCTTTAGCTGAGGCTCGGTCTTCAGT
TGTCCAGGTTTCCTGTCTAGATCCTGTCTTTTCTTTTTCTCCTACCACTG
TGGCAAATTTCTTTTTTGTCTACGATCCCTCCTGTTTTCTCTTTTTTTTT
TTGCCTCCCGCTTCTTTTTCACACACACACACACACACACACACTTTTTT
TTACCCACACACACACTTTCTCTGTCTCTTTTACTAGATCGCATAAATGG
CTCTTTCTTGTAATATACCTTCTAATCTCTGAAGTTTCTTTCTGATATCT
GGAGCTGACTGCCCTATGAAAGGCCATGCCCAATGAGCGCTCTCTGGCTT
TCTATTTTAAACCCTGTTCATGCATTCTATATGATTGACCTTAATATCCT
TTCTTTTATAATAGTCTTTTATCCCTATTTCACCCCTGCTATTTCCCTCT
TTCCCTCCACCCTTTTTTTCCCTCTGCTTTTTTCCCAACCCTTTGCTACT
TTCTCCACCCTTTTTTTTTATTTCATTTATTATTTTTTTTCGCATACTAT
CATTTATATTTCTTTCATCTCCCCTTCTTCTTTTATTTTTTT

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGCCCAGGTTCTTCTCAATTCTGCTCTCCTGTGT
TCTCAGAAGAGCAGGTAGCCAATTTGCTTCACATATGAACAACTAATTGC
AGGTGAGGCAAGGCAATATGGTAAGTTCCTGGAGCTAGAGCAAGAGACAA
TGCCTACATTTTTAGTTACCATAGTTCCTAATTTTGCCTCACATATGATA
TCAAGTTACATTTGCTCCTGTGCACTTTATTCTGTGAGAGGCATGATGCT
CTCCACGGAATGGTTCAGAGTCCTCTATATCCTCTGTACATCTTGGTTAC
TGGGTGCAACAGTCCATCAAAACAATGCAGAAACAATGAACCTCATATAG
GATTGGCTCAGTTTTGAGTAACAGTTTAGCCTCCTTCCATATAGATAATT
TATTGCATACATTTCAGAGGCATTTGTGTTCTCATCTATCAATTGAATAT
AATAATTTTTCTAGTCAGGCCATTTTTCTCTGTAAGAATTAATTTTAAAT
GTCATTATTTAACAGATGAAATTGTTTGATTTTCCCCAAAGATATATTAT
TATTCTCAGGGACCTCTTTGCTCTGATTTTACAAAACCCCTAGTATAGGA
AATGGAATTTCCTTGGATTTTTACGAAAGGCTGAATTACTATATCTATTT
TGGCCCCCTACACCCGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_j08.g1 MSMg01no342_j08.g1 CHROMAT_FILE:
MSMg01no342_j08.g1 PHD_FILE: MSMg01no342_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:08 2005
         (484 letters)



>mm_chr17_57880128_57881011
          Length = 884

 Score =  859 bits (444), Expect = 0.0
 Identities = 474/484 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcccaggttcttctcaattctgctctcctgtgttctcagaagagcaggtagccaatttg 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgcccaggttcttctcagttctgctctcctgtgttctcagaagagcaggtagccaatttg 625

                                                                       
Query: 61  cttcacatatgaacaactaattgcaggtgaggcaaggcaatatggtaagttcctggagct 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cttcacatatgaagaactaattgcaggtgaggcaaggcaatatggtaagttcctggagct 565

                                                                       
Query: 121 agagcaagagacaatgcctacatttttagttaccatagttcctaattttgcctcacatat 180
           |||||||| |||||||||||||||||||||||||||| ||||||| || |||||||||||
Sbjct: 564 agagcaagggacaatgcctacatttttagttaccatatttcctaacttggcctcacatat 505

                                                                       
Query: 181 gatatcaagttacatttgctcctgtgcactttattctgtgagaggcatgatgctctccac 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gatatcaagtaacatttgctcctgtgcactttattctgtgagaggcatgatgctctccac 445

                                                                       
Query: 241 ggaatggttcagagtcctctatatcctctgtacatcttggttactgggtgcaacagtcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggaatggttcagagtcctctatatcctctgtacatcttggttactgggtgcaacagtcca 385

                                                                       
Query: 301 tcaaaacaatgcagaaacaatgaacctcatataggattggctcagttttgagtaacagtt 360
           |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 384 tcaaaacaatgcagaaacaatgaaccccatataggattgcctcagttttgagtaacagtt 325

                                                                       
Query: 361 tagcctccttccatatagataatttattgcatacatttcagaggcatttgtgttctcatc 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 324 tagcctccttccatatagataatttattgcatacatttcagaggcgtttgtgttctcatc 265

                                                                       
Query: 421 tatcaattgaatataataatttttctagtcaggccatttttctctgtaagaattaatttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tatcaattgaatataataatttttctagtcaggccatttttctctgtaagaattaatttt 205

               
Query: 481 aaat 484
           ||||
Sbjct: 204 aaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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