BAC Information

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BAC

Clone NameMSMg01-342P24
Chromosome17 (Build37)
Map Location 84,818,578 - 84,819,065
singlet/doubletsinglet
Overlap geneThada
Upstream geneEml4, Cox7a2l, Kcng3, Mta3, Haao, Zfp36l2
Downstream genePlekhh2, Dync2li1, Abcg5, Abcg8, Lrpprc, LOC668848, 1110020A21Rik, Ppm1b, Slc3a1, Prepl, LOC100043901, 1700106N22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342P24.T7 (MSMg01no342_p24.b1)MSMg01-342P24.TJ (MSMg01no342_p24.g1)
ACCAG456416AG456417
length760729
length of high quality
(start - end)		---492 (63 - 554)
definitionCHROMAT_FILE: MSMg01no342_p24.b1 PHD_FILE: MSMg01no342_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:40 2005CHROMAT_FILE: MSMg01no342_p24.g1 PHD_FILE: MSMg01no342_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCAGATGCCANGACCGCGGATTCCGCAGCATAGCCGAGCTAGATTAT
GATAGTGACGAGTCCCCTACTAAAATCCACTCTGAACCCANAAATTGGCA
ATCATGGTTAAACCAATTAATTAAAAAACCCCATTCCCCCCACTTTAAAC
CCAAGGCCCAAAAAAAAAAAAAAAAAAGTTCCCCGTGGCTTTTTAACCCC
CCCCCCCCACAGGGAACAAACGGCNNNNNACTCACANNCAANNNNNNNNN
NNNAAAAANACAACCCACCCCTTATTTNCCCNACNCCNAANCCCCCCCNC
CNTCCCCNNNNCCNCNNNCNCCCCCCNNNNCCTCCCCCCCCCCCCCNNCT
TTTCCCCACCCCCCCNCCACCTTCCCTCTCCCCCCCCCCCTTCCTCNNAN
CCACCCCCCCCCCCCCCCCCCCCCCTCCCTCCCCCCCNCNCACTTTCCTT
TCCTTACCCTCCCCCCCCCCCCCCCACAACANCANCACCCCNCNATTTCA
TTCTTATCCCNTTCTTTTTTNTTCCCCCCCTCTCCCCCCCTCCTATAACC
NCCCCCCCCCACCCCCCCTCACCCCCCCCCCCNNNCNNANNNNCCCCTAT
CNACCCCCCTCCATATCCCCCCTCTCCCCCCCCCCCCCACCCCAACCCCT
NTCTCCCCCACCCACCCCCTTTTATCCCCTCCCCCCCNAACATCAAAACA
ACCCNCCAACTCTACCACTTCCNCCCAATCCACCAACACACCCCCTTTTC
TTATTTTTGC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXACTCATTAGTATTCATAAGTCACAAAGGAATTGCCTGT
TTTATTTTGTTTATATTAGATTTTAGAAATTATGAGTATATTGAGCTCTG
ATGAGTAGAAGTGTTAACTTTTAAACTTCAGGAGAGACCACATCATTTAG
TCGCCTGTTTACTGACTGTTTTATTGCATGGGTGTTGTGGGAACACAGAG
AAGACTCAGATGTGGTTTTCTGATCACCCAGAGCTGAGTTATGAAGCGAA
GCAGTGCCTCACTTGGAGAACCCAGGCCTGAAGGGTAACAGTTCAGATGA
TCTGTGCTGAGCATTTGCTAGAACAAGGAAAATAGACTTTCTGGTAAGAC
AGTGTCTGCACACCAGAAAGCCTTTATAATGATATAGAGGAACAAAGTTT
AGATTTTGAAGAAATTCTCATTGTTAGTAAGAAATGATTATAATGGAGCA
GGATTACTTTTAAACATAGTCATTTTATTAGGCTTTAAAGTCCTATGGAG
CGGTTCATGTAAACAAAATGGAATTAGAGTCTTCCAGCTGGAGACAGTCC
CAACATTATAAAAAATGGTTCTGTTTTTAACTCGGGATTTAAATTAAGGG
TACTAATTTATAGGATACTGGCCAAGCAAATTAGACCTTATAGACTGCGA
GTTAACCGATGGGAAGCTAATAAGCCGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_p24.g1 MSMg01no342_p24.g1 CHROMAT_FILE:
MSMg01no342_p24.g1 PHD_FILE: MSMg01no342_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:40 2005
         (492 letters)



>mm_chr17_84818378_84819267
          Length = 890

 Score =  862 bits (446), Expect = 0.0
 Identities = 479/490 (97%), Gaps = 2/490 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcattagtattcataagtcacaaaggaattgcctgttttattttgtttatattagatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 actcattagtattcataagtcacaaaggaattgcctgttttattttgtttatattagatt 629

                                                                       
Query: 61  ttagaaattatgagtatattgagctctgatgagtagaagtgttaacttttaaacttcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttagaaattatgagtatattgagctctgatgagtagaagtgttaacttttaaacttcagg 569

                                                                       
Query: 121 agagaccacatcatttagtcgcctgtttactgactgttttattgcatgggtgttgtggga 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 568 agagaccacatcatttagtcgcctgtttactgactgttttactgcatgggtgttgtggga 509

                                                                       
Query: 181 acacagagaagactcagatgtggttttctgatcacccagagctgagttatgaagcgaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 508 acacagagaagactcagatgtggttttctgatcacccagagctgagttatgcagcgaagc 449

                                                                       
Query: 241 agtgcctcacttggagaacccaggcctgaagggtaacagttcagatgatctgtgctgagc 300
           ||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||
Sbjct: 448 agtgcctcacttggagaacccaggcctgaagggtaacag-tcagacggtctgtgctgagc 390

                                                                       
Query: 301 atttgctagaacaaggaaaatagactttctggtaagacagtgtctgcacaccagaaagcc 360
           ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 389 atttgctagaacaaggaaaatagaccttctggtaagacggtgtctgcacaccagaaagcc 330

                                                                       
Query: 361 tttataatgatatagaggaacaaagtttagattttgaagaaattctcattgttagtaaga 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 329 tttataatgatatagaggaacaaagcttagattttgaagaaattctcattgttagtaaga 270

                                                                       
Query: 421 aatgattataatggagcaggattacttttaaacatagtcattttattaggctttaaagtc 480
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 269 aatgattataatggagcaggattgcttttaaacatagtcattttattaggcttt-aagtc 211

                     
Query: 481 ctatggagcg 490
           || |||||||
Sbjct: 210 ctgtggagcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 890
Length adjustment: 10
Effective length of query: 482
Effective length of database: 880
Effective search space:   424160
Effective search space used:   424160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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