XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TAGCCACAATGACAGCTATTTAAATATGTCCTGCTGTAGAGTGCGGGTGG
CAAACCCATCAATAAAGGAGACCGTGATATTTACCCAGTATACATTCAGT
TAACTGAGCTATCTCCCTGGCCTTTTCTCTTACATTCTAGATCATTGACT
TTACAACCTATCTATTCAAATAATAAAATTAACAGTGCCAAAAGTTACTT
ACTGCCTTACTTTGACTTTTCTCCCTAAATGCAAAGATCATGGATGCTTC
CAATTCTTTCTTTCATTAATGGCCCATATTTATTGTACAAAACAACAAAT
AGGGTTCATCACGGCATTGCCATTACAATGTATATAATGTCCTTTGGTCA
TGGCAACCCTTATTATCCGCATTTATTCTGCTACCTACTTTTCCTTAGTA
GATCTGCCTTCAGGAACAAACCCCTAACCCACCCCCAGATTACACATAAG
AGAAGTATGTGCTTGTTTTTCTGAGTCCGGTTTCTCTCACTTAATGTGAC
TTCCAATCCCATATATTTTTCCTGCAAGCGACATACTTTTGTTCTTCTGC
ATACACGATTATTTNNTTCCANCTACTTCTTCTCTTCCCCTCCCCCTCCC
TCCCTATTTCTATCTCTCCCCTTATTTACCCTTTCTCCCATTTTATTCAT
TCTCTTACCTCCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTGGGGATTGCATTGAAAGGCCTGCTCTGGATCA
CAAAACATATTCTTTGTCATACACACACCAAAGAGGTATGTAGGTAGGTA
GATAGACATAGATAGACATGCAGGCAGGTAGATAGGCAGACACACACATA
CACACAGAGAAAAATACAAGACACAAACTCTGTGAAAAATACAAGACTCT
CTGTGTCTCTGTGTCTGTGTCTCCCTCTCCCTCCCCCCCCTCACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACTGTATATAACCTAAGAACCAGGGGAGCCACTGTTGGCTTAAGTTTCTG
TTTTATGAAGGGCGAAATTGAGTCTAGTTACCTGCACTCCAGATCTTACT
GGACTTTAATACAATTTTCTCTGTAGCTCATGCCTGTAATCCTAGCATCC
AGCATATTGAGTCTAGAGGATTGCTTTGTCTTTGATGTTTGAATGCGCCT
CCTCATGAGCTTCACGACACCTCTATTATTTATTTTTGTTTCTCGCTATC
GACTAACGGCTTCACCTTTATTTTACCTCTTTTTGACTCCCCCACATTCT
CCCTCTCATTCCCCCTTCTTTTTTCCTATTTTTTTTTTTTCCTCTCCTCT
TATTTCCATGACCTCTCATTTTGGTTTCTTCTTCTTTCGTTTCTATTCAT
ATTTCTTTCTT

Query= MSMg01no343_c02.b1 MSMg01no343_c02.b1 CHROMAT_FILE:
MSMg01no343_c02.b1 PHD_FILE: MSMg01no343_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:50 2005
         (532 letters)



>mm_chr17_43490527_43491452
          Length = 926

 Score =  926 bits (479), Expect = 0.0
 Identities = 514/529 (97%), Gaps = 6/529 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctagccacaatgacagctatttaaatatgtcctgctgtagagtgcgggtggcaa 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ggaattctagccacaaagacagctatttaaatatgtcctgctgtagagtgcgggtggcaa 586

                                                                       
Query: 64  acccatcaataaaggagaccgtgatatttacccagtatacattcagttaactgagctatc 123
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 585 acccatcaataaaggagaccgtgatatttacccagtatgcattcagttaactgagctatc 526

                                                                       
Query: 124 tccctggccttttctcttacattctagatcattgactttacaacctatctattcaaataa 183
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tccctggccttttgtcttacattctagatcattgactttacaacctatctattcaaataa 466

                                                                       
Query: 184 taaaattaacagtgccaaaagttacttactgccttactttgacttttctccctaaatgca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 taaaattaacagtgccaaaagttacttactgccttactttgacttttctccctaaatgca 406

                                                                       
Query: 244 aagatcatggatgcttccaattctttctttcattaatggcccatatttattgtacaaaac 303
           ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 405 aagctcatggatgcttccaattctttcttttattaatggcccatatttattgtacaaaac 346

                                                                       
Query: 304 aacaaatagggttcatcacggcattgccattacaatgtatataatgtcctttggtcatgg 363
           |||||||||||||||||||||||||      |||||||||||||||||||||||||||||
Sbjct: 345 aacaaatagggttcatcacggcatt------acaatgtatataatgtcctttggtcatgg 292

                                                                       
Query: 364 caacccttattatccgcatttattctgctacctacttttccttagtagatctgccttcag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 caacccttattatccgcatttattctgctacctacttttccttagtagatctgccttcag 232

                                                                       
Query: 424 gaacaaacccctaacccacccccagattacacataagagaagtatgtgcttgtttttctg 483
           ||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct: 231 gaacaaacccctaacccacccccagattacacataggaaaaatatgtgcttgtttttctg 172

                                                            
Query: 484 agtccggtttctctcacttaatgtgacttccaatcccatatatttttcc 532
           ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 171 agtccggtttctctcacttaatgtgacctccaatcccatatatttttcc 123


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 926
Length adjustment: 10
Effective length of query: 522
Effective length of database: 916
Effective search space:   478152
Effective search space used:   478152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)