BAC Information

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BAC

Clone NameMSMg01-344B08
Chromosome17 (Build37)
Map Location 24,291,063 - 24,426,716
singlet/doubletdoublet
Overlap geneAmdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17
Upstream geneLOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1
Downstream geneAbca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344B08.T7 (MSMg01no344_b08.b1)MSMg01-344B08.TJ (MSMg01no344_b08.g1)
ACCAG457233AG457234
length763749
length of high quality
(start - end)		472 (80 - 551)476 (74 - 549)
definitionCHROMAT_FILE: MSMg01no344_b08.b1 PHD_FILE: MSMg01no344_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:09 2005CHROMAT_FILE: MSMg01no344_b08.g1 PHD_FILE: MSMg01no344_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,426,245 - 24,426,716)(24,291,063 - 24,291,538)
sequence
GCCACACGGTTCTATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCAATAGATTTCTCGGAGAGGAGGCCAGCCTTTGGG
TGTGTGTGAGGCTGGTAATGGGGTACCCAGAAAGAGCAGAAGACTGGGGA
AGCCCATGATGAGTGTACTGTGTGCCACTGGGCCTGGTGCGATGTTTTCT
CAGCATTCTCTCTGCCCAGTGTGCCTTTGGCTTCCTCCCAGGTTCTGTAG
AGGACTTCCTCCTGAAGAAGGCAAAGGAGGCTCCTGAGGGCTTTGATAAG
CTCTACGTGGTGGCAGCTTCTTTTGAAGATGTGAATAACCACACGACAGT
GAAGGCGCTGTTCAACAACCAGGCCTACCACTCCCCTAGCCTGGCTCTGA
CTCTGGTGGACAATCTTCTCTTCAAGTTGCTTTCTGGAGCCAATGCTTCC
ATTACCACAACCAACTATCCTCAGCCTCAGACAGCCATCGAGGTCTCAGA
GTCAATCCTGTACCAGTGCGTGAGACTGCCTTTCTCCCTGCCTCAAGCTT
TCGCTTCTATAGCACTTCTCGCTTTCCTGCCTGCTTCTGGGTCTCATTTT
CTTTTCAGGTGCTTATATTGCTAGTCACAGTTGCTTTCTGGCTTTCCCAG
GGGACCTCAAGGGAACTACCCTGGTGGCCACTTTTCTTTTTTGAAAAAAT
TTCCTCTTAAAGCCCCTTCCCCCTCTTGTAACTCCGTAAAAAATAACGTT
CTTTCTTTTTAAC

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCCTCAAAT
TCAGAAATCTGCCTGCCTCTGCCTCTCAAGTGTTGGGTTTAAATATATGT
ACCACCACTGCCCACTTTAAAAAAAATAATAATCCAAATTCCTAATTGCA
ATTCCCGAACCCCTGAGCCTTCTCCCAGCTGTTCTGCCAACAGGCAGACC
TGCTTGACTCTGTCCTCTGCTGAGGCCGTCTCTCCAGCCTCACAACCTTC
CCAGTGCTAGCTCCATCATTTCTGGGCAACCCCACAACACATAGCTCACT
CATCTGAGCCCCTCCTGACTGCCTATCCAGTGCAGCTGCATGAATCCACT
GAAAGTGGACCTGGGCAGAGCAGGGCCAGCTTTGTACTAGAAATAGAACT
CAGGACTACGTGCATGTCAGACAAGCTCTCCACTACAGAACTGCACCTTG
ACCCTCCTGGTCAACATTCATAAAGAGTTTGAGAGTGAGACCTTCCACCA
GTGGGAGGTTTCTACAGGCTGCTGAGTCCTGCTAGACTGGCCTCACGTGA
CACATGCTTCCCCTGTCTTTTGTGCTTGTCACACTCCCAGATTTGGTCAG
TCCTGGAAGGGTGTGGGTATGGCACAAAACCAGGTTCCCTTAATTACCTC
CCCCCTCTTCCAAATTGGCAGAATGGTGGCTTTTCTTGGGGTGGAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_b08.b1 MSMg01no344_b08.b1 CHROMAT_FILE:
MSMg01no344_b08.b1 PHD_FILE: MSMg01no344_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:09 2005
         (472 letters)



>mm_chr17_24426045_24426916
          Length = 872

 Score =  913 bits (472), Expect = 0.0
 Identities = 472/472 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagaggaggccagcctttgggtgtgtgtgaggctggtaatggggtacccagaaagagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gagaggaggccagcctttgggtgtgtgtgaggctggtaatggggtacccagaaagagcag 613

                                                                       
Query: 61  aagactggggaagcccatgatgagtgtactgtgtgccactgggcctggtgcgatgttttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 aagactggggaagcccatgatgagtgtactgtgtgccactgggcctggtgcgatgttttc 553

                                                                       
Query: 121 tcagcattctctctgcccagtgtgcctttggcttcctcccaggttctgtagaggacttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tcagcattctctctgcccagtgtgcctttggcttcctcccaggttctgtagaggacttcc 493

                                                                       
Query: 181 tcctgaagaaggcaaaggaggctcctgagggctttgataagctctacgtggtggcagctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tcctgaagaaggcaaaggaggctcctgagggctttgataagctctacgtggtggcagctt 433

                                                                       
Query: 241 cttttgaagatgtgaataaccacacgacagtgaaggcgctgttcaacaaccaggcctacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cttttgaagatgtgaataaccacacgacagtgaaggcgctgttcaacaaccaggcctacc 373

                                                                       
Query: 301 actcccctagcctggctctgactctggtggacaatcttctcttcaagttgctttctggag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 actcccctagcctggctctgactctggtggacaatcttctcttcaagttgctttctggag 313

                                                                       
Query: 361 ccaatgcttccattaccacaaccaactatcctcagcctcagacagccatcgaggtctcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ccaatgcttccattaccacaaccaactatcctcagcctcagacagccatcgaggtctcag 253

                                                               
Query: 421 agtcaatcctgtaccagtgcgtgagactgcctttctccctgcctcaagcttt 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 agtcaatcctgtaccagtgcgtgagactgcctttctccctgcctcaagcttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no344_b08.g1 MSMg01no344_b08.g1 CHROMAT_FILE:
MSMg01no344_b08.g1 PHD_FILE: MSMg01no344_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:09 2005
         (476 letters)



>mm_chr17_24290863_24291738
          Length = 876

 Score =  920 bits (476), Expect = 0.0
 Identities = 476/476 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctgtagaccaggctggcctcaaattcagaaatctgcctgcctctgcctctcaagtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctgtagaccaggctggcctcaaattcagaaatctgcctgcctctgcctctcaagtgt 260

                                                                       
Query: 61  tgggtttaaatatatgtaccaccactgcccactttaaaaaaaataataatccaaattcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggtttaaatatatgtaccaccactgcccactttaaaaaaaataataatccaaattcct 320

                                                                       
Query: 121 aattgcaattcccgaacccctgagccttctcccagctgttctgccaacaggcagacctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattgcaattcccgaacccctgagccttctcccagctgttctgccaacaggcagacctgc 380

                                                                       
Query: 181 ttgactctgtcctctgctgaggccgtctctccagcctcacaaccttcccagtgctagctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgactctgtcctctgctgaggccgtctctccagcctcacaaccttcccagtgctagctc 440

                                                                       
Query: 241 catcatttctgggcaaccccacaacacatagctcactcatctgagcccctcctgactgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catcatttctgggcaaccccacaacacatagctcactcatctgagcccctcctgactgcc 500

                                                                       
Query: 301 tatccagtgcagctgcatgaatccactgaaagtggacctgggcagagcagggccagcttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatccagtgcagctgcatgaatccactgaaagtggacctgggcagagcagggccagcttt 560

                                                                       
Query: 361 gtactagaaatagaactcaggactacgtgcatgtcagacaagctctccactacagaactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtactagaaatagaactcaggactacgtgcatgtcagacaagctctccactacagaactg 620

                                                                   
Query: 421 caccttgaccctcctggtcaacattcataaagagtttgagagtgagaccttccacc 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caccttgaccctcctggtcaacattcataaagagtttgagagtgagaccttccacc 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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