BAC Information

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BAC

Clone NameMSMg01-344E13
Chromosome17 (Build37)
Map Location 55,924,988 - 55,925,403
singlet/doubletsinglet
Overlap geneEmr4
Upstream geneEG629178, LOC100043833, LOC100043485, LOC677496, St6gal2, LOC383258, Pot1b
Downstream geneZfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344E13.T7 (MSMg01no344_e13.b1)MSMg01-344E13.TJ (MSMg01no344_e13.g1)
ACCAG457386AG457387
length780765
length of high quality
(start - end)		420 (45 - 464)456 (68 - 523)
definitionCHROMAT_FILE: MSMg01no344_e13.b1 PHD_FILE: MSMg01no344_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:25 2005CHROMAT_FILE: MSMg01no344_e13.g1 PHD_FILE: MSMg01no344_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTAGATATCGTGTTATTTAGCAATGCTTACTCAGCATAGTAAATGC
TGTTTTTATTCCTATTTATATATGACACATTTTAGTATACTCAGGCCAAA
ATTCAATTCTTGCAGTGAAGATAACCAGCCCTAAGATGGGGTCATAGACA
TAAATTCCCAATCCTAACTAAGAAGGTGTAGAGAAATGATACATGCCAGA
AAATGGAAGATATTTTTTTTCCATTGGAGTGATAAAGAATATAACAACTA
TTCTCTAGTGCAGGAACCCTGTCTATGTATGTTTGGACAACACAATAGAA
CGACATAATTTCATTTGTGAGAGATTTTTGTTTCAGTTTTTATTGTGATA
CTATTTGTCTTGTTGGATTTTGATCTGTTTTATTAGTTTTGGAGAAAGAG
AGAGATGGGGGAAGGGAAATTGACGTTCCTTTTTCCTTTTTTTTTTTTTC
TTTTTCGCCCGTGTCCTTTCTTACTTTTTCCTTCATTGCCTTTTCTATCC
CTCTTTTATTATTTTTATTACACAGCATCCTCTTTTTCTTATTCTACTCC
TTATTCATTATTTTCTTCTTTTTTATTTTTTTTTTCTTTTCCTTATTCCT
TACCTAACATTTTCTCCATCTAATTTTGTCTTTTCTTCACTTTCTCCGTA
TTTTTTGCTTCTTTATTTCATATTAAATCTTATACTAAATCTCATTAGCA
TGTTCTCTTCATTATTCATTTTATATTCGC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTCCTTTCCCATTTGTATCCCTTTGACCTTCTT
TTGTTGTCTAATTGCTCTGGCTAGGACTTTTAGAACTATACTGAAAAGGT
AGGGAGAAAGTGGGCAGCCTTGTCTAGTCCCTGATTTTAGTGGGATTGCT
TCAAGTTTCTCTCCATTTAGTTTGATGTTGTCTACTTGTTTTCTGTATAT
TGCTTTTACTATGTTTAGGTATGGGCAATGAATTCCTGATCTCTCCAAGA
CTTTTAAAATAAAGGAGTGTTTAAATTTGCCAAATGCTTTCTCAACATCT
AATGAGATAATAATGTCATTTTTTTCTTTGAGTTTGTTTAGTGGATTACT
TTGATGGATTTCCATCTATTGATCCTTCCCTGCATTCCTTGGATGAGGCC
TATTTGATCATGATGGATGATTGTTTTGATGTGTTCTTGGATTCAGTTTT
TGAGGATTTTATTGAGTAAGTTTGTATCAATATTCATAAGGGAAATTGGT
CTGAAGTTTTCTTTCTTTGTTAGGTCCTTGTGTGGTTTTAGCTGAAAGCC
TAATTGTGGCTTCTTACAATGAATTATTGCGTATTCTCTTCCGTCCCAAT
TTCGCGGAAACCCTTTGAAAAAAATTGGCATTTAAGTCCTTCTGTGAAGG
TCCTGAAAAACATTTTGTCCAAAATAATTTTTGTGCTTGGGCCTTTTTTC
TTGTTTTCTATAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_e13.b1 MSMg01no344_e13.b1 CHROMAT_FILE:
MSMg01no344_e13.b1 PHD_FILE: MSMg01no344_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:25 2005
         (420 letters)



>mm_chr17_55924784_55925603
          Length = 820

 Score =  768 bits (397), Expect = 0.0
 Identities = 412/417 (98%), Gaps = 2/417 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttagat-atcgtgttatttagcaatgcttactcagcatagtaaatgctgttttt 63
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaattcttagataat-gtgttatttagcaatgcttactcagcatagtaaatgctgttttt 562

                                                                       
Query: 64  attcctatttatatatgacacattttagtatactcaggccaaaattcaattcttgcagtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attcctatttatatatgacacattttagtatactcaggccaaaattcaattcttgcagtg 502

                                                                       
Query: 124 aagataaccagccctaagatggggtcatagacataaattcccaatcctaactaagaaggt 183
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 aagataaccagccctaagatggggtcatagacataaattcccaaccctaactaagaaggt 442

                                                                       
Query: 184 gtagagaaatgatacatgccagaaaatggaagatattttttttccattggagtgataaag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 441 gtagagaaatgatacatgccagaaaatggaagatattttttttccattggagtgacaatg 382

                                                                       
Query: 244 aatataacaactattctctagtgcaggaaccctgtctatgtatgtttggacaacacaata 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatataacaactattctctagtgcaggaaccctgtctatgtatgtttggacaacacaata 322

                                                                       
Query: 304 gaacgacataatttcatttgtgagagatttttgtttcagtttttattgtgatactatttg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacgacataatttcatttgtgagagatttttgtttcagtttttattgtgatactatttg 262

                                                                    
Query: 364 tcttgttggattttgatctgttttattagttttggagaaagagagagatgggggaag 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttgttggattttgatctgttttattagttttggagaaagagagagatgggggaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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