BAC Information

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BAC

Clone NameMSMg01-344K11
Chromosome17 (Build37)
Map Location 45,924,980 - 46,068,306
singlet/doubletdoublet
Overlap genenone
Upstream geneRunx2, Supt3h, 4930564C03Rik, EG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363
Downstream geneVegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344K11.T7 (MSMg01no344_k11.b1)MSMg01-344K11.TJ (MSMg01no344_k11.g1)
ACCAG457668AG457669
length791773
length of high quality
(start - end)
244 (72 - 315)188 (67 - 254)
definitionCHROMAT_FILE: MSMg01no344_k11.b1 PHD_FILE: MSMg01no344_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:54 2005CHROMAT_FILE: MSMg01no344_k11.g1 PHD_FILE: MSMg01no344_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,924,980 - 45,925,223)(46,068,119 - 46,068,306)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGTTTGCCAGGAATACAAAACTGACATTTAAGAACACAATCTCA
GATGCTCACTAAGTGTCTACCCTCTTCACTTTCTTTACTAACATAGTTCA
TCACCCCTCCCAGTGTCCCCAGTGGCCGGGCACCCTGTGGCTTCTGATCC
TGCTGACCTCTCTGGTCCCCTGATAGGCTCTGGAGCTATCCCCATGATGC
CTATCCTTGCTGCTAGGCAGCCTTGACTTGAATGTGGCCCTTGTCCTACT
CTGTAATGGGACCCTATTTGAAGGTTGGCTTTGGTATGGGGGTGGGGGGG
CCTTTTTTATTTCCCCCCCCCTTTTGCGTGGGGAGCTTTTCTTATACATT
TTCTTTATTTTTCCCCCCTTCTTTTTTTTTTTCCCTACTTTATCTTCCCC
ATTTCTTTTTCCAATCTATTTCCCTATTTTTTTTTTTACTATCCTTTTAT
CCTTATTATTTCATCTCTCCTTTACCTTTATCACCCCCATTATTTACCTT
TTCTACTAACCAATTCCTTTATCTATTTTTTCTCCCTTTTTCCTATTTAT
TCTCATTGATTTTATATATTTATTTTCCACCCCCCTTCCACTTTCCAATT
TCACTCACCAACAATTATATTTTTTCTTTTTCTTTTTCCTTTTCGTCTTT
TTTAATATAAATCTTTCTCTTTCTTCTTATTTTAACATTATTCTTATTCT
TCTCTTCTATTCTTTATTAACTTTCTTAAATTTTCCACTCG
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTGCGGGGCAGCAGATTCTACTGATGGCCCCTC
AGGGAGTTCCATGCGGTCAGCCCCAGTGGAGGCCCTGGGCCCAGCAGCTC
CCACGGGTCAGCAGTTCCCTTGGTGGGAATCTCAACACACCAGGTTCAGG
GCTAGACCCAGCCAGGGGCACATGGAGGGACGTTAATGGGGACTGCCTAG
AGACAGTGCGTTGGGAGGAGACTGGCCAGGAATGTGAGCAGAGAGAGTGG
GACAGGGGCGAGCAAACAATCACGTATGAATGCCGACGTGGGAAGCTGGT
GGCCACAGAGAAAGGGTGAGGGCTGGGCTGTGACTTTTTCCAGGGCTAAA
GGTTTGCATTGGGCTGAGACCTTGCCCCTAGCATGTCACACACACACACA
CATACTTTTATTTCAACTCTCCTTCACAGCATAAGAGACAGAGACACACT
TATATACATATATCCCTCTATACGTTCTTGTGACTTAATCGTTCTCCTGT
TCTGTTACCCGTCACTTTTTCTACGCCTTTTTTCGTTTTTACGTTTCTAT
TCTACCTCTAATGTATTACTTCCTTCCCTCTTTTTCTCTGTTTTCTTTAC
CGTTCTTTTCTCTTTTATTATCTATTACGTTCTCTCTTTTCATTTATGAT
TTTTCTTATATTACTTCTCTTTCCGCCTTTATTTTATTCTTTCATTCCCT
CCCCTCCCCTCATATCTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_k11.b1 MSMg01no344_k11.b1 CHROMAT_FILE:
MSMg01no344_k11.b1 PHD_FILE: MSMg01no344_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:54 2005
         (244 letters)



>mm_chr17_45924780_45925423
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaactgacatttaagaacacaatctcagatgctcactaagtgtctaccctcttcactt 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 caaaactgacatttaagaacacaatctcagatgcccactaagtgtctaccctcttcactt 260

                                                                       
Query: 61  tctttactaacatagttcatcacccctcccagtgtccccagtggccgggcaccctgtggc 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctttactaacatagttcatcacccctcccagtgtccccagtggccgggcaccctgtggc 320

                                                                       
Query: 121 ttctgatcctgctgacctctctggtcccctgataggctctggagctatccccatgatgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctgatcctgctgacctctctggtcccctgataggctctggagctatccccatgatgcc 380

                                                                       
Query: 181 tatccttgctgctaggcagccttgacttgaatgtggcccttgtcctactctgtaatggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatccttgctgctaggcagccttgacttgaatgtggcccttgtcctactctgtaatggga 440

               
Query: 241 ccct 244
           ||||
Sbjct: 441 ccct 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no344_k11.g1 MSMg01no344_k11.g1 CHROMAT_FILE:
MSMg01no344_k11.g1 PHD_FILE: MSMg01no344_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:54 2005
         (188 letters)



>mm_chr17_46067919_46068506
          Length = 588

 Score =  364 bits (188), Expect = e-105
 Identities = 188/188 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgcggggcagcagattctactgatggcccctcagggagttccatgcggtcagccccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cctgcggggcagcagattctactgatggcccctcagggagttccatgcggtcagccccag 329

                                                                       
Query: 61  tggaggccctgggcccagcagctcccacgggtcagcagttcccttggtgggaatctcaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tggaggccctgggcccagcagctcccacgggtcagcagttcccttggtgggaatctcaac 269

                                                                       
Query: 121 acaccaggttcagggctagacccagccaggggcacatggagggacgttaatggggactgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 acaccaggttcagggctagacccagccaggggcacatggagggacgttaatggggactgc 209

                   
Query: 181 ctagagac 188
           ||||||||
Sbjct: 208 ctagagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)