NTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGACATTTACGTATAGTAAGGAAGTAATTAATCCATGCACATT
TTTTTCATCAACCATTATTTTAGAACCTTAGAAACTGAAATAGAGTCTAA
AAGTCTAGAGATATTTTAATGTTAAAATACCCTCTTCATTACTTGATAAG
CCTGCAAAATCCCTGAGACAGTTTAATATAGGTTATGTGGAAAAGCTACT
TTTATAAATTACGTAGGTACAGAAAAAAGCTGTAAATCCTGTAATATAAA
GCAGGTTAACAAGTGATAGGTTGAGTTTCAAGAACTTAAATGAGTAATTG
TGAAAAACCTCATGCGTATGAAGGTTTGATAGCGTCTAAATGTAACTGGA
AGGTATGAGACTTTATGCTTATCAAAAATGAGGATATTCAAGTAAGAGAT
TTTATAAAAAAATCTAAACAATGCAGTACTCTGATTGTGGCTACACTGCC
TAGTTAGGACTATCACTTTACTGATTGTCATAGGAAAATTCAGATTCTTC
AGTGCATCAAGGTGTGTGTGTGTGTGTGTGTGTGCGTGTGCGAGTTTCCC
ACTCTCTCCCATTCTTTATTATTTTTTTATTCTTTTTCTTCTCTCTTTTT
CTACTTTATTTTTTTTTCTTCTTTTTTTTTTTTTCTTTTTTTTTCTCTCT
TTTCTTTTCTTTCTTTCTTTATATTCTTTTT

CTTTTTTCTCTCNNNNCCCCNNNNNNCCCCTTTTCTCCCCCTTTCCCTNN
NCCTNTNTNCTTTTCCCCNNATTTCCCCCTCCCTNTNNCCNNNTCCTTCT
TCTTTCCCCCTCCNNNTCNNTTTCNTTTCTTCCCTCTCCCCCCCCCCCTC
CCTTCCTTTTNTTTCCNTTTCCCTTTCCTCCCTTTCTCNNCCCCCCCCCC
NTNTTCTTTTTTCTTCNNNTTCCCCTCTCTCTTTNCTCTTTTCTTTCCTT
TCCCCTCTTCCCCNCCCTCCTCCCTCTCTCTCCTCCTCCTCTCTTCTCTC
CCTCCCCCCTCCTCTTCTTTCCCCCTTCTCCCCTTCCTCGGTAAGAGAGA
GAGAGGAGTCTGGGGAGGGGAGAAGGGGAAAAACAAAAAAGAAGGGAGAG
GAAACGAAGAAGAAAAAGAACTTCCTCCTTTNNCTTTTCCCCTTCTCTTC
CCTCTTTTTTTTTTTCTTCCTCTCTCTTTTTATTGACATTTGTTTCCCTT
TTTTTCTCTCTCTCCTCTTTTCCCTNTCTCTCTCCCCCTCTCCCCCCTTT
TCTCCTCCTCTTCTTCTTTCCCTCTTCTTNTTCCCCCTTNCCTCTCTTTC
TCCTCTCTCCTTTTCCTCCCTTTCCTTTTCTTTCTCTTCTCTTTTTCTTT
TCTCCCTACATATTTATTTTAATCCCCTCTTTCTTTTTNCTCTCTCCTCT
CCCTTTCTCTTTTTCTTCTTTTCTTCTCCTCTCTCCCTCCTTCTTTCTCT
TCTTCTTTCTTCTTCTCTTCCTCTTCNCCCCCATCTCCTCCTCTTCCTGT
ATCACCCTTCTTCCCCTCTTTTCTCCTTCTCTCCTCTCCTTCTCCTCCTC
TTTTCCTCTTCTTCTCTCCCCTTTCTTCCTCTCCTCCTCCTCTCCTTTTC
TTCTCTCTTCTCTTCTCTTCCTTCTCATCCGCCTCG

Query= MSMg01no344_m08.b1 MSMg01no344_m08.b1 CHROMAT_FILE:
MSMg01no344_m08.b1 PHD_FILE: MSMg01no344_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:03 2005
         (511 letters)



>mm_chr17_40435334_40436245
          Length = 912

 Score =  706 bits (365), Expect = 0.0
 Identities = 474/511 (92%), Gaps = 7/511 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgacatttacgtatagtaaggaagtaattaatccatgcacatttttttcatcaa 64
           ||||||||||||  | ||||||||||||| ||||||||||||||| | ||||||||||||
Sbjct: 205 gaattctgacatagatgtatagtaaggaaataattaatccatgcatacttttttcatcaa 264

                                                                       
Query: 65  ccattattttagaaccttagaaactgaaatagagtctaaaagtctagagatattttaatg 124
           ||| ||||||| ||||| ||||||||||||||||| |||||||| |||||||| ||||||
Sbjct: 265 ccactattttaaaacctgagaaactgaaatagagtttaaaagtccagagatatattaatg 324

                                                                       
Query: 125 ttaaaataccctctt-cattacttgataagcctgcaaaatccctgagacagtttaatata 183
           |||||||||||| || |||||||||||||||||||||||||||| |||||||  ||||||
Sbjct: 325 ttaaaataccct-ttccattacttgataagcctgcaaaatccctaagacagtgcaatata 383

                                                                       
Query: 184 ggttatgtggaaaagctacttttataaattacgtaggtacagaaaaaagctgtaaatcct 243
           ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 384 ggttatgtggaaaagctacttttataaattaggtaggtatagaaaaaagctgtaaatcct 443

                                                                       
Query: 244 gtaatataaagcaggttaacaagtgataggttgagtttcaagaacttaaatgagtaattg 303
           | |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcaatatagagcaggttaccaagtgataggttgagtttcaagaacttaaatgagtaattg 503

                                                                       
Query: 304 tgaaaaacctcatgcgtatgaaggtttgatagcgtctaaatgtaactggaaggtatgaga 363
           ||||||||| |||||||||||||| ||||||| ||||||||||||  |||||||||||||
Sbjct: 504 tgaaaaaccccatgcgtatgaaggcttgatagtgtctaaatgtaagaggaaggtatgaga 563

                                                                       
Query: 364 ctttatgcttatcaaaaatgaggatattcaagtaagagattttat--aaaaaaatctaaa 421
           ||||||||||||||||| ||||||||||||||||||||||| |||  ||||| |||||||
Sbjct: 564 ctttatgcttatcaaaa-tgaggatattcaagtaagagattatatttaaaaacatctaaa 622

                                                                       
Query: 422 caat-gcagtactctgattgtggctacactgcctagttaggactatcactttactgattg 480
           || | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 623 ca-tagcagtactctgattgtggctacactgcctagtttggactatcactttactgattg 681

                                          
Query: 481 tcataggaaaattcagattcttcagtgcatc 511
           ||||||||| |||||||||||||| ||||||
Sbjct: 682 tcataggaacattcagattcttcattgcatc 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 912
Length adjustment: 10
Effective length of query: 501
Effective length of database: 902
Effective search space:   451902
Effective search space used:   451902
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)