BAC Information

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BAC

Clone NameMSMg01-345J04
Chromosome17 (Build37)
Map Location 52,632,689 - 52,633,021
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043452, Satb1, EG628919, LOC672987, EG328839
Downstream geneKcnh8, LOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345J04.T7 (MSMg01no345_j04.b1)MSMg01-345J04.TJ (MSMg01no345_j04.g1)
ACCAG458365AG458366
length782782
length of high quality
(start - end)
333 (90 - 422)224 (93 - 316)
definitionCHROMAT_FILE: MSMg01no345_j04.b1 PHD_FILE: MSMg01no345_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:03 2005CHROMAT_FILE: MSMg01no345_j04.g1 PHD_FILE: MSMg01no345_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAAGACGATTAGTCCTCATGTCCGGGGACGACTCACTATTTTCAGAGGA
TCCGCGGAATTCTTACTACTGGGATGTCTAGATGGCCTATTTCTGACTGA
GCATACTTTGACCAGCTCTAAAGTTACCTCTGTCCACTGCAAGACGAAGA
TTCTCAGAGCAAAGCAGTAATCTATGGTTATGAGCATAGTTATTGAGAAG
GTGTTTTGACAGTCACGTTGTGTTGTGTATGCATCTTTGTTGGTGTTTAT
TGGTTGCACAACACAGTGGAGCTTAGTATGGCATCTTCTTATACGCACAT
AATGTACTTTCATCATACCCACATTTATTTACCAGTGAACATCCCAGTAG
GCTCAGGTCATCTTCTGAAAGGAGACACTATCATCAGTTCTTGCCAAATA
TATGTGAGCACAACTGTTACAGCTTCTACGGCTCATTGTGAATATGGTCT
AGGCCTTTGAATTAAAGATTCACAGATACCTGACTGTCACAGAGTCTCAT
TCCTGTTAGTAAACTGATGCACTAACCGACTAGGTTTTCATTCTATATGT
TTCCACCAAACTTTTCCAGTCCTATTCATTTATTATCCCCAGTTTCTCCC
TTCACCCACCAGTACTTCCTCTTCTCTTTCCTTTCTTTCTCACCTATTTC
TTTTCCTTTTTTGCTTGTCTTTTATTCTTCTACGCCCTTTGTTTCATATA
CTTTTACCCCTTTTCCTTCCTTCTATCTTCTCATCTTTCCACTTCTTCTC
TTTCTTCTTTCCTTCTAATCCTTTTTCTATTC
CTCCTCCTATGATGGTGGGTAGGCCGTGGGGGCGCGTGCGTTTCGGAAGG
TGAGXXXXXXXXXXXXXXXXXXXTTCCCGAAATTCTCACCTGAGGAATAC
CAAATGGATGAGAAGCACCTGAAAATATGTTCAGCACCCTTAATCATCAG
GGAAATGCAAATCAAAGCAACCCTGAGATTCCACCTCACACCAGTCAGAA
TGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGA
GAAAGAGGAGCACTCCTCTATTGTTGGTGGGATTGCAAGCTTGTACAACC
ACTCTGGAAATCAGACTGGCGGAACCTCAGAATTTTGTTTTTAGCACNAA
NACCAGAGGATCCAGCAAGACCTCTCTTGTGCATATATCCAGAAGATGTT
CCAACTGGTTTTAAGGACCCATGCTCCACCACCCCCATAGTTGCCTTATT
TATAATAGTCTGAATGTGTATGGAACCCAGATGGCTCTCAATCATAGATA
TGTTCTTTAACATTGTGCTTTATTTTAACTTTGTAACTCTACCCATCAAG
TCTTAACTGCGTTATTCTTGAAATTATATATACAATTTGTACGAATTTGC
TTTTTTTTCTTCTATTATTTATAAAATTTACATCTGTTAATAATGTATCA
TTCAGATACGACTTTCGTTTTTAAAAAACATGAAATTTTATTTTTTATTT
ACCTTTTCTACAACATCCCACTTATTTTGCCTTAAACCTTTTCTGTTTAA
AAATCTCGGANAAAAGTTTTGTATACAGTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_j04.b1 MSMg01no345_j04.b1 CHROMAT_FILE:
MSMg01no345_j04.b1 PHD_FILE: MSMg01no345_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:03 2005
         (333 letters)



>mm_chr17_52632489_52633221
          Length = 733

 Score =  582 bits (301), Expect = e-170
 Identities = 325/333 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctgactgagcatactttgaccagctctaaagttacctctgtccactgcaagacgaag 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctgattgagcatactttgaccagctctaaagttacctctgtccactgcaagacgaag 260

                                                                       
Query: 61  attctcagagcaaagcagtaatctatggttatgagcatagttattgagaaggtgttttga 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attctcagagcaaagcaataatctatggttatgagcatagttattgagaaggtgttttga 320

                                                                       
Query: 121 cagtcacgttgtgttgtgtatgcatctttgttggtgtttattggttgcacaacacagtgg 180
           |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagttacattgtgttgtgtatgcatctttgttggtgtttattggttgcacaacacagtgg 380

                                                                       
Query: 181 agcttagtatggcatcttcttatacgcacataatgtactttcatcatacccacatttatt 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 agcttagtatggcatcttcttatatgcacataatgtactttcatcatacccacatttatt 440

                                                                       
Query: 241 taccagtgaacatcccagtaggctcaggtcatcttctgaaaggagacactatcatcagtt 300
           ||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||
Sbjct: 441 taccagtgaacatcccagtaggcacaggtcatcttctgaaaaaagacactatcatcagtt 500

                                            
Query: 301 cttgccaaatatatgtgagcacaactgttacag 333
           |||||||||||||||||||||||||||||||||
Sbjct: 501 cttgccaaatatatgtgagcacaactgttacag 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)