Query= MSMg01no345_l12.b1 MSMg01no345_l12.b1 CHROMAT_FILE:
MSMg01no345_l12.b1 PHD_FILE: MSMg01no345_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:14 2005
(428 letters)
>mm_chr17_45135428_45136258
Length = 831
Score = 787 bits (407), Expect = 0.0
Identities = 421/427 (98%), Gaps = 3/427 (0%)
Strand = Plus / Plus
Query: 5 gaattcttcagcattacttttattggattctggcttcagcttgtatcttttgtcaaaaga 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcagcattaattttattggattctggcttcagcttgtatcttttgtcaaaaga 264
Query: 65 gttagctgctatattaagatctatgtccagaatctaccctgaaatgatgatatattactt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttagctgctatattaagatctatgtccagaatctaccctgaaatgatgatatattactt 324
Query: 125 tcttagcaatcccttgtttaaagctgcacaatttaggcaaagatggacttaaattttact 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcttagcaatcccttgtttaaagctgcacaatttaggcaaagatggacttaaattttact 384
Query: 185 cctatcttccttaaggaaaaaaa---catcatataagttagcaggcacatgattatgaaa 241
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 385 cctatcttccttaaggaaaaaaaaaacatcatataagttagcaggcacatgattatgaaa 444
Query: 242 aagttttctatgattattttattataagcatatttttattctaaagctttattaacatat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagttttctatgattattttattataagcatatttttattctaaagctttattaacatat 504
Query: 302 ttatagtaagcagcagatcatcatataatgcttgagtcatctttatttggtataaccatc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttatagtaagcagcagatcatcatataatgcttgagtcatctttatttggtataaccatc 564
Query: 362 attattctaatgaacagcattttagtttttcctcactccctaagtctcactgatatcctg 421
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attattctaatgaaaagtattttagtttttcctcactccctaagtctcactgatatcctg 624
Query: 422 ttcatta 428
|||||||
Sbjct: 625 ttcatta 631
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 831
Length adjustment: 9
Effective length of query: 419
Effective length of database: 822
Effective search space: 344418
Effective search space used: 344418
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_l12.g1 MSMg01no345_l12.g1 CHROMAT_FILE:
MSMg01no345_l12.g1 PHD_FILE: MSMg01no345_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:14 2005
(242 letters)
>mm_chr17_45306426_45307067
Length = 642
Score = 410 bits (212), Expect = e-119
Identities = 227/232 (97%)
Strand = Plus / Minus
Query: 11 tgggtaatccacaaaccagagggctctgaggtgagaggcagcacccaacagagaagagct 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgggtaatccacaaaccagagggctctgaggtgagaggcagcacccaacagagaagagct 383
Query: 71 ccgcacagtgctgttggaggattgacagcacagaaggtgcctgctcactctcctctcccc 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ccgcacagtgctgttggaggattgacagcacagaaggtgcctgctcactctcctctcccc 323
Query: 131 gactctgcccttctcagggctgccctgtcgtatatggacctcatccaggtagagtgaaat 190
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 322 gactctgcccttctcagggctgccctgtcgcatatggacctcatccaggtagagtgaaat 263
Query: 191 cttgcatccctctggctgtagaagttactgtgcggggcaatgaaatctttgt 242
|||||||||||||||||||||||||| |||||| || ||||||||||||||
Sbjct: 262 cttgcatccctctggctgtagaagttgctgtgctaggtaatgaaatctttgt 211
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
