BAC Information

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BAC

Clone NameMSMg01-347I04
Chromosome17 (Build37)
Map Location 79,229,019 - 79,229,366
singlet/doubletsinglet
Overlap geneHeatr5b
Upstream geneLOC668795, LOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps, Vit, Strn
Downstream gene2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347I04.T7 (MSMg01no347_i04.b1)MSMg01-347I04.TJ (MSMg01no347_i04.g1)
ACCAG459834AG459835
length780750
length of high quality
(start - end)
352 (50 - 401)517 (77 - 593)
definitionCHROMAT_FILE: MSMg01no347_i04.b1 PHD_FILE: MSMg01no347_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:30 2005CHROMAT_FILE: MSMg01no347_i04.g1 PHD_FILE: MSMg01no347_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTTGTCCTGTCAGTTTCACTATAGTTTCTATGTCAACTTC
AGATGAATGGTATGTAGAGTAAGCTCAAGACTCAGATATAATTCTTGGGG
GGCACTTGGAACTAAATTTAGGGTGTAGCACACATTCATTCACTGAGCCA
TGCCCCCAGCGTGCAACCTCAGTTTTCTGTTCAGAAGAACTGACTTCTCA
GATGATATTAATATTTATCCTTACATTTCAGAGCCTTCGTAGAATTCTTG
ATTCAGGGCTTCTCCGTAGTCTCTCTGTTTGGAGATAAGCTAGTTAGGTT
GGAGAATTGTACCTCTGTATGCTCTTATTAATTGTGACATTGGTTTGACA
ACATGGTCCTAAAGCTCCGCTTTGTGGCCACGCGTAGCCTCACGGCTGAA
GTGATATCTTAACGAGTCTGCCCAAATTGCCGACTGGACTGGCCGCTTCA
CTTTCTTCTTCTTTCCGCGATATTTACCATACTGTCCTATCCCTCCTGTT
CTTCCGTATTTATGCCTAGTCCGATGGTTCCCTCGGCCTCCGTTACCTAC
CCCTCTTTTGCTCCCCCCCTGCCCCTTATTTCCCCCCCCCCCTCCCCCGC
TTTATTTTTCTTCCCTCCCTTTCCCTTTATTTTTTCCCCGCTCCCCCCTT
TTTTCCCCCCCTCCATCTTTTCACCCCCCCATTCCGCCCATTTCCCCCCC
TTTTTTCCTCTCCTTCTATTTACCCTCCCN
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACATAAAACCAGAGACACTGAAA
CTTACAGAGGAGAAAGTGGGGAAGAGCCTTGAAGATATGGGCACAGGGGA
AAGATTCCTGAACAGAATAGCAATGGCTTGTGCTGTAAGATCAAGAATCG
ACAAATGGGACCTCATAAAACTGCAAAGCTTCTGTAAGGCAAAGGACATC
GTCAATAAGACAAAACGGCAATCAACAAACAGATTGTGAAAAGATCTTTA
CCTATCCTATATCCGATAGGGGGCTAATATCCAATATACACAAAAAACTC
AAGAAGTTGGACTCCAGGAAACCAAATAATCCTATTAAAAATGGAGTACT
GGGCTAAACAAAGAATTCTCAACTGAGGAATACCGAAGGGCTGAGAAGCA
CCTAAAAAAATGTTCAACATCCTTAATCATCAGGGAAACGCAAATCAAAA
CAACCCTGAGATCCCACCTCACACCTGTCAGAATGGCTAAGATCAAAAAT
TCAGATGACAGCAGTACTGGCGTGTATGTGGAGAAAGAGGAACACTCCTC
CATTGCTGGNGGGATTGCAAGCTTGGACAACCACTCTGGAAATCAGTCCT
GGCGGTTCCTCAGAAAATTGGACACCGCTTTACTGCAATATCCACTATTA
TCCCTCCTCGGCCTATCCTCCCAATATGTTCCACCTGGTATAATTCCCTG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_i04.b1 MSMg01no347_i04.b1 CHROMAT_FILE:
MSMg01no347_i04.b1 PHD_FILE: MSMg01no347_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:30 2005
         (352 letters)



>mm_chr17_79228815_79229566
          Length = 752

 Score =  665 bits (344), Expect = 0.0
 Identities = 347/348 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttgtcctgtcagtttcactatagtttctatgtcaacttcagatgaatggtat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gaattcttttgtcctgtcagtttcactatagtttctatgtcaacttcagatgaatggtat 493

                                                                       
Query: 65  gtagagtaagctcaagactcagatataattcttggggggcacttggaactaaatttaggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gtagagtaagctcaagactcagatataattcttggggggcacttggaactaaatttaggg 433

                                                                       
Query: 125 tgtagcacacattcattcactgagccatgcccccagcgtgcaacctcagttttctgttca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgtagcacacattcattcactgagccatgcccccagcgtgcaacctcagttttctgttca 373

                                                                       
Query: 185 gaagaactgacttctcagatgatattaatatttatccttacatttcagagccttcgtaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gaagaactgacttctcagatgatattaatatttatccttacatttcagagccttcgtaga 313

                                                                       
Query: 245 attcttgattcagggcttctccgtagtctctctgtttggagataagctagttaggttgga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 attcttgattcagggcttctccgtagtctctctgtttggagataagctagttaggttgga 253

                                                           
Query: 305 gaattgtacctctgtatgctcttattaattgtgacattggtttgacaa 352
           |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 252 gaattgtacctctgtatgttcttattaattgtgacattggtttgacaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)