BAC Information

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BAC

Clone NameMSMg01-348B03
Chromosome17 (Build37)
Map Location 47,615,144 - 47,615,506
singlet/doubletsinglet
Overlap genenone
Upstream geneTtbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453
Downstream geneTbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348B03.T7 (MSMg01no348_b03.b1)MSMg01-348B03.TJ (MSMg01no348_b03.g1)
ACCAG460259AG460260
length774753
length of high quality
(start - end)
375 (41 - 415)418 (72 - 489)
definitionCHROMAT_FILE: MSMg01no348_b03.b1 PHD_FILE: MSMg01no348_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:14 2005CHROMAT_FILE: MSMg01no348_b03.g1 PHD_FILE: MSMg01no348_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTGAATAGCCAGGGTTGTTATACAGAGAAACCCTGCCTCAACCCTGACCA
AATAAAGTGTGTTTATTATCTAATAAAAAGCATGAAAATACTTATTATTA
TTATTATTGAATAACAACAAGCCTGTTTATTAGATATATGTTTCTGAGGC
CTTCCTATCGGGACTGCCAGCAGAAAATTGGAACATGGAGTCATGTGACA
CATGTGCACACAGACCACCATATATACACTCGTGTATACACGCCATCATA
TATACATGTGCACAGAGAGAGAGAGAGAGAGAGAGAAGGAAGGAAGGAAG
GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA
AGGAAGGAAAGGAAAGGAATGACCGCTCCTCACCCCCCCCCTCCTTATTT
AGTAGTTCTACTACCGCCTCTCCTTTTTCTCTCCCCGTCCTTTTCCTGTT
ACTCATTCTTCTTTCAGGTCCATTTTTTCAGTCTTCCTAGTCCTCCCCAT
ATCTTACGCCCCTTCCCCATAATTGTCCATTGTTTCCCCATTTACCCACT
CTAAAAACCCTATTATACCCCCTTTCTCTCTTCCTCTTTTTCCCATCCCC
TTTCCCTTCCTTTTCCCCCTCCTCTCTTATTTATACTATTTGTATATGTG
TTATTCCCCTATATCTATCTCTAATCTCCCCCCTCTCAATTCCCTAATTA
TTCTCCCCCTTCATCCCTCACATG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGGCCAGCCTGGTCTACAAAGTGAGATC
CAGGACAGTCAGGGATATGTAGGTAGATCCTGCCTTAAATAAAAATAAAA
ACAAATCAAACTGAAAACCCCTGATTATTAAGAAAATATAACTGAGAATA
GAAAAGTTGTAACAGCTGGAGAAATAAGGAGATTGTTGTATCTCATGCAA
ATGTCAGAAGCTACACCCATAAAGTCTACCAGAAAACCACAAGAGGCATG
CTAATGTGTGTGGGGGAGGCAAGAGTTCTCAACTTGACACATAAAACTGC
AGGCAACTAAGGAATGCTGGGAGCAGGAGAAAGTCTTCCCCAGAGAAGAG
CATGCCAACTGGTTATTCAATTCCAAATGGTCAATTCTGAAAACTGATAT
ACAAGTAACATTATACTAAGAAAGCATGTTGTACTTATGCATTTAGAAGC
AATATATATACACACTCACCCATACCACATAAACATACATTATGCATTTT
ATGTAAGTAACACCAATTAATAAGCCCTGGAATTTATAACTCTTGAAAAG
TTTAAGAAATATTATTTACACCCATAAACCACTGACTAGCGACCCATGGC
TTCCCCTGTTTACAAAATTACTCGCTCTCTTTTTTCAGACAAACCGCACT
TTTGCCCCCCCTATTTCCCATCATGCCATAAACGTCTCCCTCCACCCTTC
TCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_b03.b1 MSMg01no348_b03.b1 CHROMAT_FILE:
MSMg01no348_b03.b1 PHD_FILE: MSMg01no348_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:14 2005
         (375 letters)



>mm_chr17_47614940_47615714
          Length = 775

 Score =  640 bits (331), Expect = 0.0
 Identities = 357/367 (97%), Gaps = 8/367 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgaatagccagggttgttatacagagaaaccctgcctcaaccctgaccaaata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgaatagccagggttgttatacagagaaaccctgcctcaaccctgaccaaata 264

                                                                       
Query: 65  aagtgtgtttattatctaataaaaagcatgaaaatacttattattattattattgaataa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagtgtgtttattatctaataaaaagcatgaaaatacttattattattattattgaataa 324

                                                                       
Query: 125 caacaagcctgtttattagatatatgtttctgaggccttcctatcgggactgccagcaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caacaagcctgtttattagatatatgtttctgaggccttcctatcgggactgccagcaga 384

                                                                       
Query: 185 aaattggaacatggagtcatgtgacacatgtgcacacagaccaccatatatacactcgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 385 aaattggaacatggagtcatgtgacacatgtgcacacagaccaccatatatacactcctg 444

                                                                       
Query: 245 tatacacgccatcatatatacatgtgcacagagagagagagagagagagagaaggaagga 304
            ||||||||||||||||||||||||||||||||||||||||||| ||   ||||||||||
Sbjct: 445 catacacgccatcatatatacatgtgcacagagagagagagaga-ag---gaaggaagga 500

                                                                       
Query: 305 aggaaggaaggaaggaaggaaggaaggaaggaa-ggaa-ggaa-ggaa-ggaaggaagga 360
           ||||||||||||||||||||||||||||||||| |||| |||| |||| |||||||||||
Sbjct: 501 aggaaggaaggaaggaaggaaggaaggaaggaaaggaaaggaaaggaaaggaaggaagga 560

                  
Query: 361 aggaagg 367
           |||||||
Sbjct: 561 aggaagg 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)