BAC Information

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BAC

Clone NameMSMg01-348C05
Chromosome17 (Build37)
Map Location 42,542,127 - 42,542,465
singlet/doubletsinglet
Overlap geneLOC627626
Upstream genenone
Downstream geneOpn5, Gpr115, Gpr111, EG546797, Cd2ap, Tnfrsf21, LOC100043770, Gpr110, Gpr116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348C05.T7 (MSMg01no348_c05.b1)MSMg01-348C05.TJ (MSMg01no348_c05.g1)
ACCAG460310AG460311
length742739
length of high quality
(start - end)		361 (38 - 398)497 (68 - 564)
definitionCHROMAT_FILE: MSMg01no348_c05.b1 PHD_FILE: MSMg01no348_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:20 2005CHROMAT_FILE: MSMg01no348_c05.g1 PHD_FILE: MSMg01no348_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCA
TCTATCGAATATCGAATGGCCAAGAAGCACCTAAAGAAATGTTCAACATC
TTTAGCCACCAGGGAAAATGCAAATGCAAATGACCCTGAGATTCTACCTC
ACACCAGTCAGAATGGCTAAGATCAAAAACTGAGGTGACAGTAGATGCTG
GTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTACTGGTGGGATTGCA
ACAGAGGAATGGATACAGAAAAGGTGGTACATTTATACAATGGAATACTA
CTCAGCTATTAAAAACAATTATGCCCCAGTGTAGGGGAGTGCCAGAAGTG
CGGGTGGTTAGGGTGGTGAGGAGAGGGNAGGGGATAGAGGGTTTTNNNNN
NNNNNNNNNNNNNNNNTTNNNNNNNNTNNNNNNNNTNTNNNTTNTTTTTT
TTTTTTTTTTTTTTNTTNNTTTNTTTTTTTTTTTTTTTNNTNTTTTTTTT
TTTTTTTTTNTNNTTTTTTTTTTTNTTTTTTNTNTTTTTTTTTTTTTTTT
TTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTNTT
TTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCCTNT
TTTTTTTTCCCCTTTCCCTTCCTTTTCCCCTTCCTTTCCCCTTCCCCCTT
TTCCTTTTTTCCCCCCCCCCCCCTCCTCTTTTTCCCCCTTTT

TGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATTTCCCATTTCACATGTGGGAGTGGAAATCTG
TGAAGGCTGTAAGGAATTCATGCTTTGCTCCAGGGAAGATAGAATTGTAC
CTTTGGCCTTACTCATGAGAAGGAAATAGAAGTAAACTTGTTCCTTAGCT
GACCTTTGCTTAAGGGAGGTTTCCCAGGAGTTTACCATCTCCATTCACAA
CCTGAGCAAAGGACATCAAAAACACGTCTCAGGAAACACTTGCCCACAGG
AAATACTCAAAGGAATTTTGGAGTGGTGTGCTCTATAACAGTCTCTAAAT
GACATTGCCGACGTGAAGGCAGGGCCACATGAAGCACCCTAGTCTCACAA
TGCCCTAAAAACATCAAGCAAAAGAAAAGAGTTTGGACGACTTCCTTTAA
GACCAGTTTTGGCAGTGTTGCCCATCTCTCCTGACATTTGCCTTGTGTGC
AAATGGCCTGAGAGGCGCAGGTGGAGTTGAAGCTTATGGCACAGTGAATG
TTCAAAGGAAAAGGCATACCTGTGCTAACAACAGTTTATTATTCTGTGCC
CAGAAAACTTTTGGTTTACCTTAAGGATGAGAGGAGTAACACCATTAGGA
ACGGGGCCCTATTGATGCAGCAGTGATGGTTGCCTGGACACCTGCTTGAA
GTTGCCCCTCCTTTGGCATTGTATCACTTTATGTCCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_c05.g1 MSMg01no348_c05.g1 CHROMAT_FILE:
MSMg01no348_c05.g1 PHD_FILE: MSMg01no348_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:20 2005
         (497 letters)



>mm_chr17_42541927_42542823
          Length = 897

 Score =  632 bits (327), Expect = 0.0
 Identities = 336/339 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttcccatttcacatgtgggagtggaaatctgtgaaggctgtaaggaattcatgctttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttcccatttcacatgtgggagtggaaatctgtgaaggctgtaaggaattcatgctttg 260

                                                                       
Query: 61  ctccagggaagatagaattgtacctttggccttactcatgagaaggaaatagaagtaaac 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctagggaagatagaattgtacctttggccttactcatgagaaggaaatagaagtaaac 320

                                                                       
Query: 121 ttgttccttagctgacctttgcttaagggaggtttcccaggagtttaccatctccattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgttccttagctgacctttgcttaagggaggtttcccaggagtttaccatctccattca 380

                                                                       
Query: 181 caacctgagcaaaggacatcaaaaacacgtctcaggaaacacttgcccacaggaaatact 240
           ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 caacctgagcaaatgacatcaaaaacacatctcaggaaacacttgcccacaggaaatact 440

                                                                       
Query: 241 caaaggaattttggagtggtgtgctctataacagtctctaaatgacattgccgacgtgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaaggaattttggagtggtgtgctctataacagtctctaaatgacattgccgacgtgaa 500

                                                  
Query: 301 ggcagggccacatgaagcaccctagtctcacaatgccct 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcagggccacatgaagcaccctagtctcacaatgccct 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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