XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAAGTATTACTAAAGTAAACAAAAAATTAAAGTAAGAGTGTTCACAGTGA
TGTGGAGAAATGGAAGCCCCTGTGAACTGATGTCAGACATAAAATTGTCT
ATCTGTTGTGAAAAATAATATAGTGACAAACAAACTAAAATAAAGGTATG
ACCCCTGAAATTCCACTTCTATGCATTTATATAAAATAGTTGAAAACACT
AAGGCAAGTAGTGCATGTATACACATGTTTATAATAACACTATCTATAAA
CGCTGAAATGGGGAAACAGGATAAATATACATCGACAGATAAGTGGATGA
GCCATTTGTGCTATATGCATATAATGGAATGATTTTGTCTAAGGTACAGT
ATAAGAAACTGCAAAGAGTACCATGCTAAATGAAATAAGCCATCTGCACA
GGTGGCGGCATAAAGCATGACTGATTTTATATGGTGGGTGTAGAAAAGAC
AAAGCCATTGAAGCAACCCATCCTGGTGGTGATGAGGGGCTAGAGGGATG
GAGATGTGGATATGACTTGTGTCAGGTGTGGGGAGTTTCTATACAAAATA
ATAAACTGAATGGACACGNTGACATCTAGTGCACGGCACAGACTTCACTT
CATGTAGCTCACATCACATNAAATTCATGCAGACAACTACATGTTTTTAA
TTCCCGGGACTCTGACATATAGGCTGAGTTACAAN

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCATACATCAGTACTATTTTTATACTGTTTCC
TCTCCTTCTCTTTTCAACTCTTCCTTTGCCCCATGGCTTTATCTGGAATT
TATGACCTCTTTGTCTTTAAAATATATATGTAGTACATTTGGTTAGTAGT
GGTACTCCTATGGACATGTGTTTAGGGCTGACCATTTGCGACTAAATTAC
TTGAGAAACTTTGATTTATTGTTTTTAACTTTTCTCTTCAATGCTAATTA
AGGTGGATATGTGGTAAAAATATTGGTAAATCAAAAAAATTAAGATAAAT
AATGTTTAACATGGCTTCTCAATGGTATTTCTCCTCCAGAAAAAAAAATA
CCCATAAGATTATTTGGAATAAGTGGAAGAAAAAAAGAGCAGAATCCATC
TGACACATCAGATTATTCCTGGAGGCATCAAGTTTTGTGTATCTTCTTAT
TTACAATCCATAGAAACTTCCCATGAATTAAATTCCCCATCCTTATGTAA
TATGGTTAGGTTGCTGAAACCAAAGCAATATCCATTCTCTTAAAAATCAG
GATTGGAGTAAAAGGAAATTTCCCCACACTGATAAGACCTCTACAAAAAT
ATACTTCTATTTTCAGACTTGATGGGAAAATGTTCCACCTAAAAAAAAAT
GTGGGATTCCCTTTTTTTTCTTCCTCCCAT

Query= MSMg01no348_d11.g1 MSMg01no348_d11.g1 CHROMAT_FILE:
MSMg01no348_d11.g1 PHD_FILE: MSMg01no348_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:26 2005
         (486 letters)



>mm_chr17_82374558_82375441
          Length = 884

 Score =  909 bits (470), Expect = 0.0
 Identities = 482/486 (99%), Gaps = 2/486 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catacatcagtactatttttatactgtttcctctccttctcttttcaactcttcctttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 catacatcagtactatttttatactgtttcctctccttctcttttcaactcttcctttgc 625

                                                                       
Query: 61  cccatggctttatctggaatttatgacctctttgtctttaaaatatatatgtagtacatt 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 624 cccatggctttatctggaatttatgacctcttcgtctttaaaatatatatgtagtacatt 565

                                                                       
Query: 121 tggttagtagtggtactcctatggacatgtgtttagggctgaccatttgcgactaaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tggttagtagtggtactcctatggacatgtgtttagggctgaccatttgcgactaaatta 505

                                                                       
Query: 181 cttgagaaactttgatttattgtttttaacttttctcttcaatgctaattaaggtggata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cttgagaaactttgatttattgtttttaacttttctcttcaatgctaattaaggtggata 445

                                                                       
Query: 241 tgtggtaaaaatattggtaaatcaaaaaaattaagataaataatgtttaacatggcttct 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtggtaaaaatattggtaaatc-aaaaaattaagataaataatgtttaacatggcttct 386

                                                                       
Query: 301 caatggtatttctcctccagaaaaaaaaatacccataagattatttggaataagtggaag 360
           || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cattggtatttctcctccag-aaaaaaaatacccataagattatttggaataagtggaag 327

                                                                       
Query: 361 aaaaaaagagcagaatccatctgacacatcagattattcctggaggcatcaagttttgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aaaaaaagagcagaatccatctgacacatcagattattcctggaggcatcaagttttgtg 267

                                                                       
Query: 421 tatcttcttatttacaatccatagaaacttcccatgaattaaattccccatccttatgta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tatcttcttatttacaatccatagaaacttcccatgaattaaattccccatccttatgta 207

                 
Query: 481 atatgg 486
           ||||||
Sbjct: 206 atatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 884
Length adjustment: 10
Effective length of query: 476
Effective length of database: 874
Effective search space:   416024
Effective search space used:   416024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)