Query= MSMg01no349_i01.b1 MSMg01no349_i01.b1 CHROMAT_FILE:
MSMg01no349_i01.b1 PHD_FILE: MSMg01no349_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:08 2005
(497 letters)
>mm_chr17_66770566_66771462
Length = 897
Score = 884 bits (457), Expect = 0.0
Identities = 484/493 (98%)
Strand = Plus / Minus
Query: 5 gaattcaaaggtgttctcgctgtatgacacaggaccctgttgctcacgtggagtgatgtt 64
|||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gaatccaaaggtgttttagctgtatgacacaggaccctgttgctcacgtggagtgatgtt 638
Query: 65 gagcaccgtcatccctgtgggagggatgtaggaaggagccttcttgccagtgaactcgag 124
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gagcactgtcatccctgtgggagggatgtaggaaggagccttcttgccagtgaactcgag 578
Query: 125 ttactgcaggggcgtgaccaagctatctgctttaaaattgtgaagggcacaccaagtatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ttactgcaggggcgtgaccaagctatctgctttaaaattgtgaagggcacaccaagtatt 518
Query: 185 tcctgttttcaggggtctgaaaacctctgaaaggaggcatttttggtcaaggattgggtt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tcctgttttcaggggtctgaaaacctctgaaaggaggcatttttggtcaaggattgggtt 458
Query: 245 tatttgtgaacaaatgctgttgcgtggccacccaagtgtcacggagtcccctcggaaaca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tatttgtgaacaaatgctgttgcgtggccacccaagtgtcacggagtcccctcggaaaca 398
Query: 305 cataccgtggacatgagagagtgggcgataggaggaatccattctgcattatttgcctag 364
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 397 cataccgtggacatgagagggtgggcgataggaggaatccattctgcattatctgcctag 338
Query: 365 atagaacaagcttgctcagcctctgagcgcatagtcattttggatgggaattcttggagg 424
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 337 atagaacaagcttgctcagcctctgagcgcatagtcattttggaagggaattcttggagg 278
Query: 425 taggagctgttccatgggatgtcagtagcccagcagcgtctctctcagtctctttccatc 484
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 277 taggagctgttccatgggatgtcagtagcccagcagcatctctctcagtctcttcccatc 218
Query: 485 agatgctatgagt 497
|||||||||||||
Sbjct: 217 agatgctatgagt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_i01.g1 MSMg01no349_i01.g1 CHROMAT_FILE:
MSMg01no349_i01.g1 PHD_FILE: MSMg01no349_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:08 2005
(562 letters)
>mm_chr17_66560763_66561725
Length = 963
Score = 1035 bits (535), Expect = 0.0
Identities = 556/563 (98%), Gaps = 1/563 (0%)
Strand = Plus / Plus
Query: 1 gaagctgctgcttctggagagcagcgatatcaaacaaatggagcgcagatgctgttctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagctgctgcttctggagagcagcgatatcaaacaaatggagcgcagatgctgttctgt 260
Query: 61 gactttcaggagagcagtagtgtgcttctacatccctgcaagtccagcgtaggctaattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactttcaggagagcagtagtgtgcttctacatccctgcaagtccagcgtaggctaattt 320
Query: 121 tacagaggcaagcccacacaaggactagggaaggcaccacatgcttacgtaaccctgagg 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tacagaggcaagcccacacaaggactggggaaggcaccacatgcttacgtaaccctgagg 380
Query: 181 taatcctcttttctgaagaggctggccatgaagtgaggttgagtaccttcctcgacctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatcctcttttctgaagaggctggccatgaagtgaggttgagtaccttcctcgacctct 440
Query: 241 gctgatagatttgtccggggg-aaaaaaatcccaacacatggactagaaattaaaccaaa 299
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgatagacaggtccgggggaaaaaaaatcccaacacatggactagaaattaaaccaaa 500
Query: 300 gtaggtatataggagtcctttggttgcaacaaaagaaaaaggaagaaaaaaccaataaca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaggtatataggagtcctttggttgcaacaaaagaaaaaggaagaaaaaaccaataaca 560
Query: 360 aataaaaccagcaccctgcactatagggacaataccccaaccagagcacagatttataca 419
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 aataaaaccagcaccctgcactatagggacaataccccaaccaaagcacagatttataca 620
Query: 420 cacggtgtttccttttcacttacagttccctcacaaatgttacatgtgaacaggaagcga 479
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacggtgtttctttttcacttacagttccctcacaaatgttacatgtgaacaggaagcga 680
Query: 480 gagtatccctcccaccacatctgcactgtggctgtctttacttttgccttcagggacttt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagtatccctcccaccacatctgcactgtggctgtctttacttttgccttcagggacttt 740
Query: 540 ttcctccctagtgataatgccaa 562
|||||||||||||||||||||||
Sbjct: 741 ttcctccctagtgataatgccaa 763
Score = 56.8 bits (29), Expect = 4e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 267 aatcccaacacatggactagaaattaaac 295
|||||||||||||||||||||||||||||
Sbjct: 35 aatcccaacacatggactagaaattaaac 7
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 562
Length of database: 963
Length adjustment: 10
Effective length of query: 552
Effective length of database: 953
Effective search space: 526056
Effective search space used: 526056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
