XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CCAAATGGCAGCTTTTTCATCTGAATTGTACTGGTTAAAAATTCAGGAAA
TGTCAAAAGAATTTCTTTAGTCATTTTATAGATTGACAGTCCAGCTGGGA
TACATATTGTATAAAGCAGAATATTCATGAATCTCTTTGAATATATTAAT
AATAAAATTATATGCCTTTAACTTACAAACTATAGACACGTACTTCTAAA
TATTTTTAGTCCTTGATCCATAAGTCATGAAATGTCCTTAAAGTCACCTT
GAAAAGTTATTTACAAAGTGGTTATTTACAGAGGACTAAAGATAAAAAGG
AATCTTGAGTTTGTTAATACAGTCTTCTAGGTATCCAAAAGTGACAAAGT
TAGCAGAAAACATAGTTAACGTAAAAAATTATGAAATGGTGATAAGATTT
TGGTGTATATTACACCAAATTACACAGTAAATCATATAATTTCTTAACAT
TATTTTCAACAAAAGACATCCATTAGCAGCTCTACTGATAACAAAATTAG
CCTATCTTAATACTGACTATGTAAATTTAATATATATACATATGTTGCAT
AGACTAAAACCTAGAAATCTTGAGTTAGTGTTTCTATAAACAGACCAACC
TGAAAATACATCTCTTAAATATATGTTTCAAGTAAATCAATTTATACATT
TCCTAACCACTTTACCAAACCACACCAAAAACAAN

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTTA
ATAGGGTTATTTGGTTTTCTGGAGTCCAACTTCTTGAGTTCTTTGTATAT
ATTGGATATTATCTCCCTATCGGATTTAGGATTGGTAAGGATCTTTTCCC
AATCTTTTAGTTGCAGTTTTGTCTTATTGACAATGTCCTTTGCCTTACAG
AAGGTTTGCAATGTTTTGAGGTCCCATTTGTCTATTCTTGATCTTACGTC
ACAAGCCACTGCTGTTCTGTTCAGTAATATTTTTCCCTGTGCCCATATGT
TTGAGGACCTTCCCCACATTCTCTATAAGTTTGAATGTTTCTGGTTTTAT
GTGGAGTCCTTTGATCCACTTAGACTTGAGCTTTCAAGGAGATAAGAATG
GATCAATTTGCATTCTTCTACATGATAACCACCAGTTGAGCCAGCACCAT
TTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCTTTGTC
AAAGATCAAGTGACCATAGGTGTGTGGCTTCACTTCTGGGTCTTCAATTG
TATTCCATTAATCTACCGGCCTGTCACTCTACCAGTACCAAGCAGTCTTT
TATCTGTTGCTCTCGTATTACAGTTAGAGTTCAGGTATGGCGATTCCACC
TGAGGTTATTTTTATTGTTGAGAAAAGTCTTTGGTTCCTAAGTTT

Query= MSMg01no349_o10.b1 MSMg01no349_o10.b1 CHROMAT_FILE:
MSMg01no349_o10.b1 PHD_FILE: MSMg01no349_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:39 2005
         (680 letters)



>mm_chr17_54613078_54614157
          Length = 1080

 Score = 1261 bits (652), Expect = 0.0
 Identities = 670/676 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccaaatggcagctttttcatctgaattgtactggttaaaaattcaggaaatgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccaaatggcagctttttcatctgaattgtactggttaaaaattcaggaaatgt 264

                                                                       
Query: 65  caaaagaatttctttagtcattttatagattgacagtccagctgggatacatattgtata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaaagaatttctttagtcattttatagattgacagtccagctgggatacatattgtata 324

                                                                       
Query: 125 aagcagaatattcatgaatctctttgaatatattaataataaaattatatgcctttaact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagcagaatattcatgaatctctttgaatatattaataataaaattatatgcctttaact 384

                                                                       
Query: 185 tacaaactatagacacgtacttctaaatatttttagtccttgatccataagtcatgaaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tacaaactatagacacgtacttctaaatatttttagtccttgatccataagtcatgaaat 444

                                                                       
Query: 245 gtccttaaagtcaccttgaaaagttatttacaaagtggttatttacagaggactaaagat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtccttaaagtcaccttgaaaagttatttacaaagtggttatttacagaggactaaagat 504

                                                                       
Query: 305 aaaaaggaatcttgagtttgttaatacagtcttctaggtatccaaaagtgacaaagttag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaaaggaatcttgagtttgttaatacagtcttctaggtatccaaaagtgacaaagttag 564

                                                                       
Query: 365 cagaaaacatagttaacgtaaaaaattatgaaatggtgataagattttggtgtatattac 424
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagaaaacatagttaacttaaaaaattatgaaatggtgataagattttggtgtatattac 624

                                                                       
Query: 425 accaaattacacagtaaatcatataatttcttaacattattttcaacaaaagacatccat 484
           |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 625 accaaattacacagtaaatcatataatttcttaacattatttgcaacaaaatacatccat 684

                                                                       
Query: 485 tagcagctctactgataacaaaattagcctatcttaatactgactatgtaaatttaatat 544
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 685 tagcagctctactgataacaaaattagcttatcttaatactgactatgtaaatttaatat 744

                                                                       
Query: 545 atatacatatgttgcatagactaaaacctagaaatcttgagttagtgtttctataaacag 604
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 745 atatacatatgttgcatagactaaaacctagaaatcttgagttagtgtctctataaacag 804

                                                                       
Query: 605 accaacctgaaaatacatctcttaaatatatgtttcaagtaaatcaatttatacatttcc 664
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 accaacctgaaaattcatctcttaaatatatgtttcaagtaaatcaatttatacatttcc 864

                           
Query: 665 taaccactttaccaaa 680
           ||||||||||||||||
Sbjct: 865 taaccactttaccaaa 880


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)