BAC Information

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BAC

Clone NameMSMg01-349P05
Chromosome17 (Build37)
Map Location 41,042,230 - 41,042,578
singlet/doubletsinglet
Overlap geneEG435528
Upstream geneLOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik
Downstream geneCenpq, Mut, Ldha-ps3, LOC627577
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349P05.T7 (MSMg01no349_p05.b1)MSMg01-349P05.TJ (MSMg01no349_p05.g1)
ACCAG461683AG461684
length767741
length of high quality
(start - end)		355 (44 - 398)626 (80 - 705)
definitionCHROMAT_FILE: MSMg01no349_p05.b1 PHD_FILE: MSMg01no349_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:43 2005CHROMAT_FILE: MSMg01no349_p05.g1 PHD_FILE: MSMg01no349_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGGTCAGCTGCCTTCTTATAACTGGCTGAACCCTAAGTGTCTGCTAT
CCTTCTGTGTCAGTAGGTAAAAATCCAAACCTAAACTAACTTGTACTTCC
TCTCCTAGAGAATGAAGATGTAGAAGCAGCCTTGGCCACACCTCAGTTCA
CAGAGTTGACTGACGAAAACAAGCAGACATAAAACTAAATTTGACAAGAG
TGATTTATCTTTTAACTGGGAAGTGCTTAGGTTCTAAATTCTTGAAAATG
CCAGACATAGTCTTGGATTTTTAATTTTAAATCATTAGAAAATGAGTACT
TACTGGTAATCATGTAACTCTGATGGGTCCTCCTCCCCCCTCCTCNNNNN
TTNTNCNNTTTNCCCCCCCCCCCTCTNTTTTTCTTTCCTTTCTTCCTCCC
CCTCCTTTTTTTTTTTTTTTTCCCCTCTTCTTCTTTCCTCCCCCTTTTTT
TCCCTTTTTCTTTTTTTCTTTTTTTCCTTCTTTCCCTTTTCCTTTTTTTT
CTTCTCCCCCCTCTCCTCTTCCTTTCTTTTTTTTCTTCTCTTTCCCCCCC
TTCTCTTTTTTCTCTCTTCTCTTTTCCTTTTCTTTTTTTCTCCCTCCCTC
TTTTTCCCCCTTTCTTNTTCCTTTCCCTTTTCCTTCTTCCCTCTTTTTCC
TCCCCCTCCTCCCCCTCCCTTTTCTTCTCTTTTCTCCTTCCTCTCNCTTC
TTTCCCTCCTCCTTTTN

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAATTGCAATCTAATACTAA
ATAACTTAACGATGTGGAGCCTCAGAGATCAATCACTCAGTGGTTTTGAG
CACTTGCCGCTCTTGCAGAGGACCCAGGTTCAATACCCAGCACGCAGTGG
CCCACAACCATCTCTAACTCTAATTTCAGGGGCTCCAATGCTGACTTCTG
AGAGTGCTGCGATAACTACTACAGATGTTCATACAGGCAAAACACTCACA
TAAAGAAGATAATAAAGTTTAAATGATGGTGTCGAATGACAAGGGGAAAT
TTATTTTTTTAAAGTGGTAGACTTAGATCATTTTAAATACCCAGAAAAGG
GTTGGAGATAGGGCTCAGTGGTCAAAGGTTCAGATTACTCTTGCAGAGGA
ACAATTTTGATTCTCAACACTCAACTCCCCAATTCTCAACTTCCTATAGT
TCCAGCTCCTAGTTATCCCATGTCTCTGGCCTCCACGTACCTATCTGCAC
TCCAGTTTACATACATATCCACAGACACATTCATCTAATTAAAGACAAAT
TAATTTAAAAATTAAACTTAAAATAGTAGACCTACTGTCAATCCAATCTT
AATTACAAATACTTTTTAAAGATGTATTTATTTTTATGTGCACTCATGTT
TTGCCTGCATGCAGGCCTGTTTGAGGGAGTCAGATCCTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_p05.b1 MSMg01no349_p05.b1 CHROMAT_FILE:
MSMg01no349_p05.b1 PHD_FILE: MSMg01no349_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:43 2005
         (355 letters)



>mm_chr17_41042027_41042781
          Length = 755

 Score =  675 bits (349), Expect = 0.0
 Identities = 349/349 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaggtcagctgccttcttataactggctgaaccctaagtgtctgctatccttct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ggaattcaggtcagctgccttcttataactggctgaaccctaagtgtctgctatccttct 493

                                                                       
Query: 64  gtgtcagtaggtaaaaatccaaacctaaactaacttgtacttcctctcctagagaatgaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gtgtcagtaggtaaaaatccaaacctaaactaacttgtacttcctctcctagagaatgaa 433

                                                                       
Query: 124 gatgtagaagcagccttggccacacctcagttcacagagttgactgacgaaaacaagcag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gatgtagaagcagccttggccacacctcagttcacagagttgactgacgaaaacaagcag 373

                                                                       
Query: 184 acataaaactaaatttgacaagagtgatttatcttttaactgggaagtgcttaggttcta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 acataaaactaaatttgacaagagtgatttatcttttaactgggaagtgcttaggttcta 313

                                                                       
Query: 244 aattcttgaaaatgccagacatagtcttggatttttaattttaaatcattagaaaatgag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aattcttgaaaatgccagacatagtcttggatttttaattttaaatcattagaaaatgag 253

                                                            
Query: 304 tacttactggtaatcatgtaactctgatgggtcctcctcccccctcctc 352
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tacttactggtaatcatgtaactctgatgggtcctcctcccccctcctc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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