BAC Information

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BAC

Clone NameMSMg01-351F06
Chromosome17 (Build37)
Map Location 29,176,083 - 29,176,675
singlet/doubletsinglet
Overlap geneSfrs3
Upstream geneAnks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38
Downstream geneLOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1, LOC100042885, LOC100042888, Zfand3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351F06.T7 (MSMg01no351_f06.b1)MSMg01-351F06.TJ (MSMg01no351_f06.g1)
ACCAG462726AG462727
length742778
length of high quality
(start - end)
597 (54 - 650)171 (80 - 250)
definitionCHROMAT_FILE: MSMg01no351_f06.b1 PHD_FILE: MSMg01no351_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:33 2005CHROMAT_FILE: MSMg01no351_f06.g1 PHD_FILE: MSMg01no351_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGTTTTTTTATGATTGAAATGGCATCATTCTTGGACC
AGGCAGTATTGCCTGGATACAAACTCCTCATCTCCTCAAATCAAGCCTCT
AAAATAGTTTCTATAGGACTGAATTTACCTATTACAGGTGAGTGAAGTCC
TAGGAGATAGGAGTTCAAAATCTTGCCCCTTTTGCTATTTTGAAAAACAA
CACACTGTTGCCCATCATAATAAAGAGTATTTGTTAGCTAATAGATGGTT
GTACTGATGGCTTGTTTTTCATTTTTTTTGTGCTTTTTGGTCCATCTATT
AATAAAAATGAACCCCGTTACAGAGTCACCATCATGTCTCTTCTCACCAC
CCTCTGAATCTGCATTAGCCAGTCAACTAGCCCTTTCAGCGTCATGTGAC
CAGCGCGCCCCATTCAGCTTGGCTGGTGTCGTTTCACATGACCCAGGCTG
GCCAGTCGTCAGGTTGCACCGCCCTTTGGTTCCCGAGCATGCTGTTTTCT
CTCAGCCTTCTCTCCAACCTTAACCAAATCGGCAGCAGCCACCTCGACCG
CCCACACATTCCTGGNCAATCAGCTCAGCTGTTTATTTACCAAATGTCTT
CACAACAACTACAGCAGCAGCCTTCGGCTAACAAAAAGCANGGAAAATCC
CCAACACCCCCTTCGCCAACCAATTATATCCACGCAACATCN
NNNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCACTTTGTAGACCAGGCTG
GCCTCGAACTCATGCCCGGCTCAGCTTATGTTTCTTTTCTTTCTTTTTTT
TTTTTTAAAGATTTATTTATGCCGGGCGTGGTGGTGCACGCCTTTAATTC
CAGCACTCGGGAGGCAGAGGCAGGTGGCTTTCTGAGTTCGAGGCCAGCCT
GGTCTACAGAGTGAGTTCCAGGACAGCCAGGACTACCCAAAGAAACCCTG
TCTCGAAAAACATTTATGAAAACAACGATTATATTTTTTTTTACATGTAA
GCACCTTGTACCTGTCCTTCTGACCCACCCNACCATGCCATCAAATCTCT
CCTCCTATGTTTGTAACCCACTCTGTGGCTTCGCCGGAACTTGAACTCTC
TGTTTTTCGGAAGACTTTCTTATCGTTCCTTATTCTCTTGCACTTTCTTC
ACTCCCCCTTTGCCACGTTTCTTTCTTCTCATCTTCATACTCCCCTTTTT
CTCACAAACCTTTTCTGTTCTCTTCCAACCCACCAATACGCTCATGTTAC
ATTCATACAATTTCCTCTTTCCACTACTTTTCCAACTTCACCCACATTAT
ATTTTTCCCCCCCCTTTTGCCATTCCTCTTTTTTCTTATCTTTTTACTTC
TTTTCCTCTCCCTGTCCCCGATACCTTCTCCCTTTTTTTCTTTTCTCTCA
TTCTTACTCTCCCATACTCACTTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_f06.b1 MSMg01no351_f06.b1 CHROMAT_FILE:
MSMg01no351_f06.b1 PHD_FILE: MSMg01no351_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:33 2005
         (597 letters)



>mm_chr17_29175879_29176875
          Length = 997

 Score = 1141 bits (590), Expect = 0.0
 Identities = 592/593 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtttttttatgattgaaatggcatcattcttggaccaggcagtattgcctgga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtttttttatgattgaaatggcatcattcttggaccaggcagtattgcctgga 264

                                                                       
Query: 65  tacaaactcctcatctcctcaaatcaagcctctaaaatagtttctataggactgaattta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tacaaactcctcatctcctcaaatcaagcctctaaaatagtttctataggactgaattta 324

                                                                       
Query: 125 cctattacaggtgagtgaagtcctaggagataggagttcaaaatcttgccccttttgcta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctattacaggtgagtgaagtcctaggagataggagttcaaaatcttgccccttttgcta 384

                                                                       
Query: 185 ttttgaaaaacaacacactgttgcccatcataataaagagtatttgttagctaatagatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttgaaaaacaacacactgttgcccatcataataaagagtatttgttagctaatagatg 444

                                                                       
Query: 245 gttgtactgatggcttgtttttcattttttttgtgctttttggtccatctattaataaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttgtactgatggcttgtttttcattttttttgtgctttttggtccatctattaataaaa 504

                                                                       
Query: 305 atgaaccccgttacagagtcaccatcatgtctcttctcaccaccctctgaatctgcatta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgaaccccgttacagagtcaccatcatgtctcttctcaccaccctctgaatctgcatta 564

                                                                       
Query: 365 gccagtcaactagccctttcagcgtcatgtgaccagcgcgccccattcagcttggctggt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gccagtcaactagccctttcagcgtcatgtgaccagcgcgccccattcagcttggctggt 624

                                                                       
Query: 425 gtcgtttcacatgacccaggctggccagtcgtcaggttgcaccgccctttggttcccgag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtcgtttcacatgacccaggctggccagtcgtcaggttgcaccgccctttggttcccgag 684

                                                                       
Query: 485 catgctgttttctctcagccttctctccaaccttaaccaaatcggcagcagccacctcga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 catgctgttttctctcagccttctctccaaccttaaccaaatcggcagcagccacctcga 744

                                                                
Query: 545 ccgcccacacattcctggncaatcagctcagctgtttatttaccaaatgtctt 597
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 745 ccgcccacacattcctggccaatcagctcagctgtttatttaccaaatgtctt 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)