BAC Information

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BAC

Clone NameMSMg01-352F19
Chromosome17 (Build37)
Map Location 56,282,751 - 56,283,128
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043833, LOC100043485, LOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b
Downstream geneTnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352F19.T7 (MSMg01no352_f19.b1)MSMg01-352F19.TJ (MSMg01no352_f19.g1)
ACCAG463507AG463508
length915791
length of high quality
(start - end)		194 (77 - 270)368 (78 - 445)
definitionCHROMAT_FILE: MSMg01no352_f19.b1 PHD_FILE: MSMg01no352_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:52 2005CHROMAT_FILE: MSMg01no352_f19.g1 PHD_FILE: MSMg01no352_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACACACTGGCCAGAGGAAGATGGCTTTGATTTCTAACCTTCCTC
AAGTGCTGGGGTGACAGGCATGTGCCATCACACTTGGTGTTTGTTGTTCT
GGGGCATCTGGAAGGCCCAGTCCCAGTTTTTTTTTTTTTAAAAGATTTAT
TTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT
ATTTATTATATGTAAGCACACTGTATCTGTCTTCACACTCACCTCATCAG
CGCATCTGACCTCACTATTTTTTTTTTTTGCACTTTCCCTGCGTTTTCCT
GCCATTTCGCCTTTTCCCTCCTTCCACTCATATTTCCCCCTTTGCTTCCT
TATCCCCCCATTTATTTCTCCACCTAACCCCCCATCTTCTATCTTTTTTT
TTTTCCATCCTTTTCCCCTTTTCTCCCTTCTCCCACTCCATCTCTTTTAT
CTTTATTTCATCTTTCTTCTTATCTACTTTTCCCCTTCCCCCCTTTACCC
TTCCACTTCCACCCTTCCTCCCTTCCTTCCCTTTTTCCCTCCTCCACTCT
CCCACCTCCCCTTCTTTTCTCTTCCGCTCCCACTCTCTTCCCCTCTTTCC
TTCCTATATCATTTCCGCTTTAGCTTCACACCAATTTTCCATCACACTTT
TCACACACTTACCACCTGTTAAACCCCTAACTCGCCACCTCTCCCCCCTT
CCCCCCGACACTATTTTTATTTTTTCTCTTTTTTCGACACTACGCCACCC
TCTCCCCTTTATTTCTATTCTTTTTCACCCCTTCCCCTACTTTATTTTTC
TTTCTTTTTCCTTTATACCCCCCTCCTCTCCTTATTTTCTTCTCCTTCCT
CCCCATCTCCTTTAN

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGAGACAATGATTTCAGGAG
CACATATTGAGCACCTACTGTGTGCATAACCACAGGTGCTTTGCACATCT
GAGAACAACTTTACTGAGTACCTATGCTGTACACCGTAGCCTGGGCACTT
TGCTCACTCAGATAACCACAGGAGCACGTATTGAGTGTCTATGGTATGTA
CTGTAACTAAGGTATTTTGTAGACTTGGATAACCTTGCGTGTTCTCCTTG
AGCACCTACTATGGCACCAGAGCTAGGGCATTTTGCACACTGGGATGGAT
AACCTCAGTAGAGTACCTGTTGTAAAGTTGGCACAACTCTGGGCACTTTG
CACTTCTGTAGCCAAGCAGAATTCGCACGCAGGACAGAGTGCTGTGGGGT
TGGTCTGAGTCCTTCCCTGTACGGAGAGGATGCCTGTGAAGTTGACCTGT
TTCGGGTGGCTGGGACTGCCCCTGTTCTCTCCGCGATTTATATTCTACTT
AACCCCCCTTAAACTTTCCCCCCTATGCCTTTTTCACCCCTTTTTGTACC
TTTATCCACCTTTTCTCTCTTCTTCCCCTTTTTACCCCCCCTCCCACCCT
CCCCCTTTCTCTCCCCCCTTTTTTCTTTTCCGCCCTTTTCTCGCCCGCTT
TCTCCTATCCCTTTTTGTTCATCCAAACCCCTTTCCTTTTTTTACCCCCC
CCCTACCCTCCTCCTTTTAATCTCTATATTATTACCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_f19.g1 MSMg01no352_f19.g1 CHROMAT_FILE:
MSMg01no352_f19.g1 PHD_FILE: MSMg01no352_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:53 2005
         (368 letters)



>mm_chr17_56282561_56283328
          Length = 768

 Score =  673 bits (348), Expect = 0.0
 Identities = 366/378 (96%), Gaps = 10/378 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagagacaatgatttcaggagcacatattgagcacctactgtgtgcataaccacaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 cagagagacaatgatttcaggagcacatattgagcacctactgtgtgcataaccacaggt 250

                                                                       
Query: 61  gctttgcaca----------tctgagaacaactttactgagtacctatgctgtacaccgt 110
           ||||||||||          |||||||||||||||| |||||||||||||||||||||||
Sbjct: 251 gctttgcacatctgaataactctgagaacaactttattgagtacctatgctgtacaccgt 310

                                                                       
Query: 111 agcctgggcactttgctcactcagataaccacaggagcacgtattgagtgtctatggtat 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agcctgggcactttgctcactcagataaccacaggagcacgtattgagtgtctatggtat 370

                                                                       
Query: 171 gtactgtaactaaggtattttgtagacttggataaccttgcgtgttctccttgagcacct 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gtactgtaactaaggtattttgtagacttggataaccttgcgtgttctccttgagcacct 430

                                                                       
Query: 231 actatggcaccagagctagggcattttgcacactgggatggataacctcagtagagtacc 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 actatggcaccagagctagggcattttgcacactgggatggataacctcagtagagtacc 490

                                                                       
Query: 291 tgttgtaaagttggcacaactctgggcactttgcacttctgtagccaagcagaattcgca 350
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tgctgtaaagttggcacaactctgggcactttgcacttctgtagccaagcagaattcgca 550

                             
Query: 351 cgcaggacagagtgctgt 368
           ||||||||||||||||||
Sbjct: 551 cgcaggacagagtgctgt 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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