BAC Information

Click to search

BAC

Clone NameMSMg01-352J14
Chromosome17 (Build37)
Map Location 27,280,679 - 27,281,046
singlet/doubletsinglet
Overlap geneIhpk3
Upstream geneAxin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik
Downstream geneLemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352J14.T7 (MSMg01no352_j14.b1)MSMg01-352J14.TJ (MSMg01no352_j14.g1)
ACCAG463686AG463687
length771750
length of high quality
(start - end)		382 (53 - 434)424 (83 - 506)
definitionCHROMAT_FILE: MSMg01no352_j14.b1 PHD_FILE: MSMg01no352_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:12 2005CHROMAT_FILE: MSMg01no352_j14.g1 PHD_FILE: MSMg01no352_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCCTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTTCTTCTGCAGCATTGAAGCTTACTACAATGCCCTGG
AGCCCAGCGCTGCGCTATGCTCCCCAATTAGGGAAATAAATTTGTTAATA
AAATTGCTGAGGTCACCAGTGATTACTGGTGCGCCTTAATATTCTTTCTG
TTTGTTTATTCTGATCAGCGGGCTGCCCGGTACTTCCAATTTATGAGAAA
CTGGTGTGCGCTCAGCAAGAACAGCGCACCAGTTTCCTGTGGTCTCTCAG
GAAACTCTGTAGCAATGGGCCTGGGAAAATATTTGCATGGGAATGAGGAG
AGGGAGGGCCGAGAGCACAGCTTAGTTGGTAGCCTGCTTGCCCAGGTTAC
AGGTCATGAGTTCCATCCCCAGGCCCGCACTGCACAGCTGGCGGTACATG
CTAGGAGTCCCCGCACTTGCTAGGTGCAGCCATTATTTTTCCTTCATTTC
CCCCGTCTTCCTTGATTATCGAACGACCTCCCCGACAATTCTTCTTGGCT
ATTCCCTGCTATATCCCAATCCTTCGCCCTTTTTTCCCCTTCCCCTTCCC
CCCCCTTTTTCTCTCTCTCCTCCTCCTCTTATAGTTTCCCTTCTTTTTCA
CTTTTCCCCCTCTTTTTTTTCCCTCCTTTCTCTTTTTCCCCCCTCCCCTA
TATTTCCTTTTTGCTTCCTCTACATCCATACCTCATTAATTCACCGTATC
CTATCACCCTTACCATCCTTN

NNTTTTTCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATCTGCTTCAGAGCT
ACTAAGAGCTGGCTTCCTGAGCTCATCTAGTGACGAGTATCTCCTAGAGA
CCTCCGCTAATTGATCTTTTTTCTTTTCTTTTTTCTTTTCCTTTCTTCTA
ATCTCTCCCCAGGTATTCTTACCTGACCTAAACTTTTCCTCGGGTTCAAG
ACCCTTGGAAAGGCCTGTATACTTATTTTGTGAACCATATTTTTTCTTTG
CTCCTATTCTCTCTCCCCGCTTTACTTCTGATAGATTGTCCTGAACTTCA
TCCAGAATCTTTAGCCCTATCTTAATCACCCTGATAACATGTGAAAAAGA
ACAAAAGGGCTCCTAACACTAGAAAAAATTCAAGGCCAAACATACCTTGT
AAAGCTATTTTCCACTTTACTTCTGATAGACTGTCTTGAATTTCGCTAGA
AAGTTCAAGACCAGACTTACCTTGTAAAGCTGTACTCACTGGTACTTTTG
TTCCCCAGCTGAAAAGGTCCGAATTCCTGGCGTTGAATCCTTTCTCACCG
CCTTGTTTACGGGTCCCTTATTTTCCGTTACTCGCCCTCTTTGCTTCCCA
ATGAGTGATTCCCCCTCTCCCCGCTTTCTCTTTTCTTTATCTTTTCCCCC
CCTTTTTTTTTTCCCCCTTTCTTTTCTTTCCCTTTTCCCTTCCTCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_j14.b1 MSMg01no352_j14.b1 CHROMAT_FILE:
MSMg01no352_j14.b1 PHD_FILE: MSMg01no352_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:12 2005
         (382 letters)



>mm_chr17_27280475_27281256
          Length = 782

 Score =  681 bits (352), Expect = 0.0
 Identities = 364/368 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttcttctgcagcattgaagcttactacaatgccctggagcccagcgctgcgct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gaattccttcttctgcagcattgaagcttactacaatgccctggagcccagcgctgcgct 513

                                                                       
Query: 65  atgctccccaattagggaaataaatttgttaataaaattgctgaggtcaccagtgattac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 atgctccccaattagggaaataaatttgttaataaaattgctgaggtcaccagtgattac 453

                                                                       
Query: 125 tggtgcgccttaatattctttctgtttgtttattctgatcagcgggctgcccggtacttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tggtgcgccttaatattctttctgtttgtttattctgatcagcgggctgcccggtacttc 393

                                                                       
Query: 185 caatttatgagaaactggtgtgcgctcagcaagaacagcgcaccagtttcctgtggtctc 244
           |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 392 caatttatgagaaactggtgtgtgcgcagcaagaacagcgcaccagtttcctgtggtctc 333

                                                                       
Query: 245 tcaggaaactctgtagcaatgggcctgggaaaatatttgcatgggaatgaggagagggag 304
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 332 tcaggaaactctgtagcaatgggcctgggaaaatatttgcacgggaatgaggagagggag 273

                                                                       
Query: 305 ggccgagagcacagcttagttggtagcctgcttgcccaggttacaggtcatgagttccat 364
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 272 ggccgagagcacagcttagttggtagcctgcttgcccaggttacaggtcacgagttccat 213

                   
Query: 365 ccccaggc 372
           ||||||||
Sbjct: 212 ccccaggc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |