NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTAAAAAATTATTTTAAAGCAACACCAAGAGAAACAGATCCAAT
GTATTTGACAAACTCAGCAAGATTTTCTGGTACAGAATGTTTGTAAACTA
AATTCAACAACAACAGATCAAAAAATAAAAAGTATAGTATAATTCAGTGG
TTTCATTCCAAAGAAGCAAGAATGTTTCAACATGTCAGAATTAATGGATG
TAATAAGCCGCAATAGTCAGTGTTAATGATCATTGTGACAGAATCCAGAA
TTATGCAGATTACGAGCCTTTGGGCATGCATGTGTAGGATTATTTTAGCT
ACATTAGTTGATGTGGGAAGACTCATATTGATTATATAAGGTGGAGAAAG
CAAACTGATCACAAGCTTGCATGTTTGCCTTTGTACACCCCCTGTTTCCA
CTTAGTGGATGATTTACATCCAGTATTTTGAAGGGTTATTTTTTTTCTCC
TTAAGAAGGTCTGCTTTAAAATATTTTTTAAAAAATGTAATCAGGAAACC
ATGTATATTTCTTTGAACCATGTTGCTGCAGGCTCTTATGGGCAAGGAAA
CTTTGCTGCTTTTTATAATGATGAGCCCCGACCCCTAATTTGAAAAAGAG
AATATTTGATGGTTTCTTCCATAACTTCTTCTATTTAACCCTACAAAAAA
ACGCCTTAAAGGAAACCTTTGAACCCTCATTTTTTGTCGCTTGAACAAAT
TTTATACATAAATCCTCTTTAGG

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAGGTCCTAAGGACATTACAAGA
ACATTACACACAGAATCAAAGCATGGCTCATAGAAACCAAGGCAAAAACC
ACAGACCATGTGCAAGTCTGAATGAGGTCCTCTGCATCTTGGTTGGGTAG
ATTGGTGTTCTTATGGGACTCCTAATGGTGGATATGGGGGGGTGNCTCTC
ACTCTTTTGCCTGTTCTTGANACCNTTTTCTCCTACTGATTTGCCTTACC
TANCCTGTACTGCTGTCTGGATGTAAAGTATGAAGGAAGAATACATTAAA
ACATGCTTATTAGTGGTGCTATTTGTCTGTCTCCACTTCCACTCCCCCTG
TAACACTCTTCTCTCTCCTTCCTGTTATTGTATCCTCCAACTCTACTGCT
ATCCTCATTGGATCTTTCCCCTCCCTGTTTTCCCTGCCGAGATTCTTTTC
CCTTCTCTGCTTTACGTTGTCTTTTCCCCTTTCCTTTTCTCTTTCTGCTT
TTCTCCTTTCCTTCCTGTTTCTCCATCTTTTGTCTCCCCTTCTTCTTCCC
GTTCCACCTCCCTTTCTTTTCCCCTTTTCCTTATACCCTTATCTTTCCCC
CTTTTCCCTTCCTCTCTCGCTACTTAGCGTGCACCCTTTGTTTGTCTCCC
TTCTATTCCATTATTTCTTTTCCTTACGTCTCTATCACCTCCTCCCCTTT
ACTTCCCCTATCCCCTCCCCTTTTTCCCTCCTTCCCCTATTTCCTTCCCT
ACCTTCA

Query= MSMg01no352_m21.b1 MSMg01no352_m21.b1 CHROMAT_FILE:
MSMg01no352_m21.b1 PHD_FILE: MSMg01no352_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:29 2005
         (537 letters)



>mm_chr17_40565544_40566482
          Length = 939

 Score =  381 bits (197), Expect = e-110
 Identities = 449/569 (78%), Gaps = 72/569 (12%)
 Strand = Plus / Plus

                                                                       
Query: 20  tattttaaagcaacaccaagagaaacagatccaatgtatttgacaaactcagcaagattt 79
           ||||||||||||||||||||||||||||||| |||| |||||| |||| |||| |||| |
Sbjct: 220 tattttaaagcaacaccaagagaaacagatctaatgcatttgagaaacacagccagatgt 279

                                                                       
Query: 80  tctggtacagaatgtttgtaaactaaattcaacaacaacagatca------aaaaataaa 133
           |||||||||||||||||| |||| |||||||||||||||||||||      ||||||   
Sbjct: 280 tctggtacagaatgtttgcaaaccaaattcaacaacaacagatcatttttaaaaaat--- 336

                                                                       
Query: 134 aagtatagtataattcagt-ggtttcattccaaagaagcaagaatgtttcaacatgtcag 192
             |||||||||||| |||| ||||||||||||||||||||||  |||||||| |||| ||
Sbjct: 337 --gtatagtataatccagttggtttcattccaaagaagcaagcttgtttcaatatgtaag 394

                                                                       
Query: 193 aattaatggatgtaataagccgcaatag-tcagtgttaatgatcattgtgacagaatcca 251
           |||||||||||||||||||||   || | | |||||||||||||| ||||||||||||||
Sbjct: 395 aattaatggatgtaataagcc---at-gat-agtgttaatgatcaatgtgacagaatcca 449

                                                                       
Query: 252 gaatt-atgcagat--tacgagcctttgggcatgcatgtgtaggattattttagctacat 308
           || || ||||||||  |  | |||| | ||||||| |||||| ||||||||||| |||||
Sbjct: 450 ga-ttcatgcagatgtt--gggcctctaggcatgcctgtgtaagattattttagatacat 506

                                                                       
Query: 309 tagttgatgtgggaagactcatattgattat----------------------------- 339
            | || |  | ||||||||||||||||||||                             
Sbjct: 507 caattaacataggaagactcatattgattattggtaggactgttccatgggcatggaatt 566

                                                                       
Query: 340 ---------ataaggtggagaaagcaaactgatcacaagcttgcatgtttgcctttgtac 390
                    ||||||| |||||| |||||||||||||| ||||| |||||||||||||| 
Sbjct: 567 acagactatataaggtagagaaaacaaactgatcacaatcttgcctgtttgcctttgtat 626

                                                                       
Query: 391 accccctgtttccacttagtggatgatttacatccagtattttgaagggttatttttttt 450
           ||| || | ||| |||||||  ||| ||||||||||||||||| ||     || ||||| 
Sbjct: 627 acctccaggttctacttagtatatgttttacatccagtatttttaa-----atgtttttc 681

                                                                       
Query: 451 ctccttaagaaggtctgctttaaaatattttttaaaaaatgtaatcaggaaaccatgt-a 509
           |||||||||||||| | ||||||||||||||| |||| || ||||||||||||||||| |
Sbjct: 682 ctccttaagaaggtatactttaaaatattttt-aaaagatataatcaggaaaccatgtga 740

                                        
Query: 510 tatttctttgaacc-atgttgctgcaggc 537
            |||||  ||| || ||| ||||||||||
Sbjct: 741 -atttcaatga-cctatgctgctgcaggc 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 939
Length adjustment: 10
Effective length of query: 527
Effective length of database: 929
Effective search space:   489583
Effective search space used:   489583
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)