BAC Information

Click to search

BAC

Clone NameMSMg01-352P02
Chromosome17 (Build37)
Map Location 35,306,859 - 35,426,444
singlet/doubletdoublet
Overlap geneAif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1
Upstream genePsmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2
Downstream geneH2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352P02.T7 (MSMg01no352_p02.b1)MSMg01-352P02.TJ (MSMg01no352_p02.g1)
ACCAG463944AG463945
length805741
length of high quality
(start - end)
359 (53 - 411)340 (83 - 422)
definitionCHROMAT_FILE: MSMg01no352_p02.b1 PHD_FILE: MSMg01no352_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:40 2005CHROMAT_FILE: MSMg01no352_p02.g1 PHD_FILE: MSMg01no352_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,426,090 - 35,426,444)(35,306,859 - 35,307,198)
sequence
GCGAGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTATGTGTTCACTTTAACTATTTATGCTGATGTCACAAA
TTTTAAGTTAACCTCTTCGTTAGAAGTTTTACTGGGATCATACTCCTCAT
GAAATTTAGAGAATTAACCCAAAACCTAAAGAGTCGAGATGAGCAGCCAT
AGTCCCCACTGTGAATAGTCTGTCCCTTTATGTTTCCTCTTCTTTCTCTG
TCACACAACTGGCCTCCTGCTTTGTTCTCTCCCACTCCTGCTGCTGGGTT
GGCTTCTGGCTCCCAAACTGCAACAAACTTACAGAGCCATGGATGGTAAC
TTAGAGGACAAGAAGTTTCCACTGTGTGAGGATGAGGGAGAGACAATGGG
GTTTGGAGGAAAGAGTTTGTTCCCCCCCCCCCCAAANAAATATAAAATAT
ATATTTTGTATTTACTATTTCTCCCCCCTTTCTCTTTCCCCTCTTTTCCC
TCTACTTATCCCCCCCTCCCCCCCTTTTACCCTTCTTCTCCCTCTCCCCC
TTCTTACCTCCCCTCCCTCCTTCCGTATTCCCCTCTCCCTCCCCCTTTTT
TCCGCGTTCCCCCTTCCCCCCCTCTTTTTTCTCCCTCCCCTTCCCCCTTC
TTCTTTATTTCCCTTCCTTTACTCCCTTCTCCCCCACTTTTTCTTTTCGC
CCCCTTTCCTCCTTCTTCCCCCCCCCCTTTTTATTCGTTTCCTCCCTCGC
ATGCGTNACCTCGCTCGCTCCTCTTCCTCCCTTCTCCCTCCCCTCCTCTT
CTTCT
NNNNNNACAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGGCCAGAGACAACTC
ACCTGGATCCCTCGGAGAGAGAAAGGCCTGGCCTTGGGTCCTTAGGTCCC
TTGCTTTTCCTGGTTTGTGGGCTGTTCCACAGTTTCTATCATTTAGAGAT
GCTGAATTCACCATCTTTGCCTCTGGTAGCTTCCTGATATACCCCCTCTT
CCCTTCATTAGTAGCCGGGGCGGGACAGGGGGCGTGGGGGGCTTTTGGCA
GTCCTGGGAATCGAACCTAGGGCTAGGCAAGCATTCTACCACTGAGCGTT
AGCTCTGGCTCCAGACTGGACTTGATGGTTTCTCTGCATGAGAAGCCCAA
CGTCTTGTTTAACTTTATAGTATCATGAGGCCTTCACCCCATCTGTTCAC
TCAGGCTTCAAACATTGCTGAGAACTTCTGATAGGTCAAGTACCAAAGCT
TCTTTCCTAGCTGGGCAGTGGTGTCCCATACCTTTATTCTCCGTACTCGG
GATCACGGCGGACGGTTGATTTTTAGTCTATTAGTCCCTACCCCCTGTAC
TTCCCGTATTACCGCTTTCGCCTTCGACACCCCCTTCTTGCCCTACCCAT
TTATCCCCCCCCTCCCCTATTTCGCCCCCTTTTCTCTCCCCCCCTTCTCA
TTTCCCCCCTCCCTGTCCCCCCCCTATCGCCTCCCCTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_p02.b1 MSMg01no352_p02.b1 CHROMAT_FILE:
MSMg01no352_p02.b1 PHD_FILE: MSMg01no352_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:40 2005
         (359 letters)



>mm_chr17_35425886_35426644
          Length = 759

 Score =  663 bits (343), Expect = 0.0
 Identities = 352/355 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatgtgttcactttaactatttatgctgatgtcacaaattttaagttaacctct 64
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gaattctatgtgtagactttaactatttatgctgatgtcacaaattttaagttaacctct 500

                                                                       
Query: 65  tcgttagaagttttactgggatcatactcctcatgaaatttagagaattaacccaaaacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tcgttagaagttttactgggatcatactcctcatgaaatttagagaattaacccaaaacc 440

                                                                       
Query: 125 taaagagtcgagatgagcagccatagtccccactgtgaatagtctgtccctttatgtttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 taaagagtcgagatgagcagccatagtccccactgtgaatagtctgtccctttatgtttc 380

                                                                       
Query: 185 ctcttctttctctgtcacacaactggcctcctgctttgttctctcccactcctgctgctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctcttctttctctgtcacacaactggcctcctgctttgttctctcccactcctgctgctg 320

                                                                       
Query: 245 ggttggcttctggctcccaaactgcaacaaacttacagagccatggatggtaacttagag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggttggcttctggctcccaaactgcaacaaacttacagagccatggatggtaacttagag 260

                                                                  
Query: 305 gacaagaagtttccactgtgtgaggatgagggagagacaatggggtttggaggaa 359
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 259 gacaagaagtttccactgtgtgaggatgagggagagacaacggggtttggaggaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no352_p02.g1 MSMg01no352_p02.g1 CHROMAT_FILE:
MSMg01no352_p02.g1 PHD_FILE: MSMg01no352_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:40 2005
         (340 letters)



>mm_chr17_35306659_35307398
          Length = 740

 Score =  658 bits (340), Expect = 0.0
 Identities = 340/340 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtggccagagacaactcacctggatccctcggagagagaaaggcctggccttgggtcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtggccagagacaactcacctggatccctcggagagagaaaggcctggccttgggtcct 260

                                                                       
Query: 61  taggtcccttgcttttcctggtttgtgggctgttccacagtttctatcatttagagatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggtcccttgcttttcctggtttgtgggctgttccacagtttctatcatttagagatgc 320

                                                                       
Query: 121 tgaattcaccatctttgcctctggtagcttcctgatataccccctcttcccttcattagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaattcaccatctttgcctctggtagcttcctgatataccccctcttcccttcattagt 380

                                                                       
Query: 181 agccggggcgggacagggggcgtggggggcttttggcagtcctgggaatcgaacctaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agccggggcgggacagggggcgtggggggcttttggcagtcctgggaatcgaacctaggg 440

                                                                       
Query: 241 ctaggcaagcattctaccactgagcgttagctctggctccagactggacttgatggtttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaggcaagcattctaccactgagcgttagctctggctccagactggacttgatggtttc 500

                                                   
Query: 301 tctgcatgagaagcccaacgtcttgtttaactttatagta 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgcatgagaagcccaacgtcttgtttaactttatagta 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)