Query= MSMg01no353_j02.b1 MSMg01no353_j02.b1 CHROMAT_FILE:
MSMg01no353_j02.b1 PHD_FILE: MSMg01no353_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:29 2005
(623 letters)
>mm_chr17_36633296_36634319
Length = 1024
Score = 648 bits (335), Expect = 0.0
Identities = 346/353 (98%), Gaps = 7/353 (1%)
Strand = Plus / Minus
Query: 4 ggaattcttagagaagacagttagcctcatcctggagttcagagttataaaatcaatatg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ggaattcttagagaagacagttagcctcatcctggagttcagagttataaaatcaatatg 294
Query: 64 gaccagtatagacccta-gccagctatgctgtttctatgtgctttcctctgatgctggcc 122
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gaccagtatagaccctaggccagctatgctgtttctatgtgctttcctctgatgctggcc 234
Query: 123 ttatgttgctgtagttcatatgaggcaaagagagacagagacacagagacacagaaacag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 ttatgttgctgtagttcatatgaggcaaagagagacagagacacagagacacagaaacag 174
Query: 183 agacagacaaaaaagaggagacaggcagacaaaaacagagaaactcaaagagagaagaca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 agacagacaaaaaagaggagacaggcagacaaaaacagagaaactcaaagagagaagaca 114
Query: 243 gt------ggggggggcagacagacagacaataactcgttatttaatgagaaggagacag 296
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 gtggggggggggggggcagacagacagacaataactcgttatttaatgagaaggagacag 54
Query: 297 agatagacatggagaggaggggagaggaagagggacaaagagagacagagaga 349
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 agatagacatggagaggaggggagaggaagagggacaaagagagacagagaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1024
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1014
Effective search space: 621582
Effective search space used: 621582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_j02.g1 MSMg01no353_j02.g1 CHROMAT_FILE:
MSMg01no353_j02.g1 PHD_FILE: MSMg01no353_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:29 2005
(476 letters)
>mm_chr17_36426018_36426893
Length = 876
Score = 913 bits (472), Expect = 0.0
Identities = 475/476 (99%), Gaps = 1/476 (0%)
Strand = Plus / Plus
Query: 1 ttctaatgtagaaggcaatggtggtgcatgcctgtaacacttgtcattgggaagcagagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctaatgtagaaggcaatggtggtgcatgcctgtaacacttgtcattgggaagcagagg 260
Query: 61 agttcaaaccttcctgaactagaggggattcatttcttttctttttttttttttctcttg 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 agttcaaaccttcctgaactagaggggattcatttcttttc-ttttttttttttctcttg 319
Query: 121 gtttttcgagacagggtttctctgtgtagccctggctgtcctggaactcactttgtagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtttttcgagacagggtttctctgtgtagccctggctgtcctggaactcactttgtagac 379
Query: 181 caggctggcctctaactcagagatccgcctgcctctgcctcccaagtggtgggattaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caggctggcctctaactcagagatccgcctgcctctgcctcccaagtggtgggattaaag 439
Query: 241 gcgtgcgccaccacacccagcaggattcatttcttaaagagcaaaagcattgacaaaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcgtgcgccaccacacccagcaggattcatttcttaaagagcaaaagcattgacaaaaat 499
Query: 301 tcacatagcaattaaatacttcctgtctacaaatctcatctgaaacattactgcaatttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcacatagcaattaaatacttcctgtctacaaatctcatctgaaacattactgcaatttt 559
Query: 361 ttcccccacacacataagtggacacagttcagattgtctccggagagctaggtgtcaagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttcccccacacacataagtggacacagttcagattgtctccggagagctaggtgtcaagg 619
Query: 421 cacacccaagcaaacccagcatttggaaggttcaggcaggaggatcaggagttcaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cacacccaagcaaacccagcatttggaaggttcaggcaggaggatcaggagttcaa 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
