Query= MSMg01no355_b02.b1 MSMg01no355_b02.b1 CHROMAT_FILE:
MSMg01no355_b02.b1 PHD_FILE: MSMg01no355_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:25 2005
(597 letters)
>mm_chr17_56282551_56283547
Length = 997
Score = 1069 bits (553), Expect = 0.0
Identities = 586/603 (97%), Gaps = 10/603 (1%)
Strand = Plus / Plus
Query: 5 gaattccagagagactatgatttcaggagcacatattgagcacctactgtgtgcataacc 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gaattccagagagacaatgatttcaggagcacatattgagcacctactgtgtgcataacc 254
Query: 65 acaggtgctttgcaca----------tctgagaacaactttactgagtacctatgctgta 114
|||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 255 acaggtgctttgcacatctgaataactctgagaacaactttattgagtacctatgctgta 314
Query: 115 caccgtagcctgggcactttgctcactcagataaccacaggagcacgtattgagtgtcta 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 caccgtagcctgggcactttgctcactcagataaccacaggagcacgtattgagtgtcta 374
Query: 175 tggtatgtactgtaactaaggtattttgtagacttggataaccttgcgtgttctccttga 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tggtatgtactgtaactaaggtattttgtagacttggataaccttgcgtgttctccttga 434
Query: 235 gcacctactatggcaccagagctagggcattttgcacactgggatggataacctcagtag 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gcacctactatggcaccagagctagggcattttgcacactgggatggataacctcagtag 494
Query: 295 agtacctgttgtaaagttggcacaactctgggcactttgcacttctgtagccaagcagaa 354
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 agtacctgctgtaaagttggcacaactctgggcactttgcacttctgtagccaagcagaa 554
Query: 355 ttcgcacgcaggacagagtgctgtggggttggtctgagtccttccctgtagggagaggat 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ttcgcacgcaggacagagtgctgtggggttggtctgagtccttccctgtagggagaggat 614
Query: 415 gcctgtgaggctgagctgtgtcgggtggctgggactgccctgcaccttccagtgagcgca 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 615 gcctgtgaggctgagctgtgtcgggtggctgggactgccctgcaccttccagtgagtgca 674
Query: 475 acccagctgaagcccccagacaccccctcccccaatggcctcagcagatctccttggaag 534
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
Sbjct: 675 acccagctgaagcccccagataccccctcccccactggcctcagcagatctccttggagg 734
Query: 535 tctaagcaattactgcatttgcactctaaccagcaaagtccccagaagagcccaatcacc 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tctaagcaattactgcatttgcactctaaccagcaaagtccccagaagagcccaatcacc 794
Query: 595 ctc 597
|||
Sbjct: 795 ctc 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_b02.g1 MSMg01no355_b02.g1 CHROMAT_FILE:
MSMg01no355_b02.g1 PHD_FILE: MSMg01no355_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:25 2005
(417 letters)
>mm_chr17_56419798_56420614
Length = 817
Score = 806 bits (417), Expect = 0.0
Identities = 417/417 (100%)
Strand = Plus / Minus
Query: 1 caggctagccagaaaagaaaaaacaatgaaaatgaagagccccccatccctgcattgtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 caggctagccagaaaagaaaaaacaatgaaaatgaagagccccccatccctgcattgtcc 558
Query: 61 cggctggaacccagtgtctgggatatgttctccctctaatagggcccctttctctgtgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cggctggaacccagtgtctgggatatgttctccctctaatagggcccctttctctgtgct 498
Query: 121 gtagatggaatccgtgaaacagggtgtggaccagaggctgggggaggggcaggagaagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gtagatggaatccgtgaaacagggtgtggaccagaggctgggggaggggcaggagaagct 438
Query: 181 gcaccagatgtggctcagctggaaccagaagaccccacaggatgctgaaaaggacccagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gcaccagatgtggctcagctggaaccagaagaccccacaggatgctgaaaaggacccagc 378
Query: 241 taagccagaggtacctgctggggcccccgggatccccatatgagtgtccatgccctgttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 taagccagaggtacctgctggggcccccgggatccccatatgagtgtccatgccctgttc 318
Query: 301 agcataactcatgcttcctgtccccagggcaaccacagaaaccatgacagaattctattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agcataactcatgcttcctgtccccagggcaaccacagaaaccatgacagaattctattt 258
Query: 361 tgttttggctttggtttttaatttttgcatttttattagtattactggggtaaggtg 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tgttttggctttggtttttaatttttgcatttttattagtattactggggtaaggtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space: 329664
Effective search space used: 329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
